Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1219 ATGGATTCAAGTGCCCCATTATTGCTGTTCGAGCCCCAAGACCAACCACACAATCAACTTCCTTTTCTCGACACTTCCCAATCAAACAAGACCCTCTTCGTACCTTCCAAATTCATTTGGCCAAAAGGGGACTTAGTAAACGCTTATCAAAAGCTCACTGAACCACACGTTGACCTTCAGGGCTTCCTTAAGGGCGATAAAAAGGCAACCATCGAAGCTTCCAACCTCGTAAGAAAAGCCTGCTTGAAACATGGCTTCTTCCAAGTTATCAACCATGGCGTTGATCAAAAACTCTTGGCCACTGCTCTTGATAAAATGGCCTCTCTTTTTAACCTCCCTTTGAACCAAAAGATTAGGGCTTTCCATGGCTCCCCTTCCAAAATGTGGGGCTTTTCCACTGCCCATTCTAATCGCTTTTCCTCAAAGCTGCCATGGAAGGAAACTTTTTCCTTTGGATTTGACCATTGGAATAGTTCAAATGAACCAGCTGTGGTTGATTTCTTCGCTTCGACTCTTGGCAAGGAGTTTGAAGAAATAGGGCTTCTATATCAAAAGTACTGCGAAGCAATGAGGGACCTATCCCTCGCATTAACGGAGCTTCTGGCTATAAGCTTAGGCGTGGAGAGGTCGCATTTCCGTAAGTTTTTCGAAGATGGAAGCTCCATAATGCGATTAAACAGCTACCCAATTTGCGAACAAGGCGGCATGGCCCTCGGCACTGGCCCTCACTGTGATCCAACAGGCTTGACCATCCTCCACCAGGACCAGGTCGGTGGTCTCGAAGTCTTTGCCAACAACAAATGGCATACCGTTCCCCCCTCTCAAAATGCACTTGTGGTTAACATTGGTGACGTCTTCATGGCATTGTGCAATGGAGAATACAAAAGTTGCGTGCATAGGGCGGTGGTGAACAAGCACAATGAAAGGAGGTCGCTGGCATTTTTCCTTTGTCCGACGAAAAACAAGGTGGTGAGGCCACCGGAGAATCTTGTCGCCGGCGATGAATCGAGGAAGTACCCGGATTTTGCCTGGTCGGAGCTGCTTGAATTCACTCAAAAATACTACAGAGCCGATGCTGTAACTCTTCAAAACTTCACCAAATGGGTCGTGTCGTCGAGGCCTTGTGATCTTTAG 1134 47.18 MDSSAPLLLFEPQDQPHNQLPFLDTSQSNKTLFVPSKFIWPKGDLVNAYQKLTEPHVDLQGFLKGDKKATIEASNLVRKACLKHGFFQVINHGVDQKLLATALDKMASLFNLPLNQKIRAFHGSPSKMWGFSTAHSNRFSSKLPWKETFSFGFDHWNSSNEPAVVDFFASTLGKEFEEIGLLYQKYCEAMRDLSLALTELLAISLGVERSHFRKFFEDGSSIMRLNSYPICEQGGMALGTGPHCDPTGLTILHQDQVGGLEVFANNKWHTVPPSQNALVVNIGDVFMALCNGEYKSCVHRAVVNKHNERRSLAFFLCPTKNKVVRPPENLVAGDESRKYPDFAWSELLEFTQKYYRADAVTLQNFTKWVVSSRPCDL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10203623 10205275 + Tan0000307.1 Tan11g1219 768156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1219 377 PRINTS Isopenicillin N synthase signature 306 324 - -
Tan11g1219 377 PRINTS Isopenicillin N synthase signature 77 94 - -
Tan11g1219 377 PRINTS Isopenicillin N synthase signature 243 264 - -
Tan11g1219 377 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Tan11g1219 377 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Tan11g1219 377 FunFam Gibberellin 20 oxidase 2 25 356 - -
Tan11g1219 377 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 156 IPR026992 -
Tan11g1219 377 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 35 348 IPR050231 GO:0009416(PANTHER)|GO:0009686(PANTHER)|GO:0009826(PANTHER)|GO:0009908(PANTHER)|GO:0016706(PANTHER)|GO:0045544(PANTHER)
Tan11g1219 377 Gene3D - 23 350 IPR027443 -
Tan11g1219 377 SUPERFAMILY Clavaminate synthase-like 33 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1219 K05282 - - csv:101209625 632.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1285 Tan-Chr3:69117606 Tan11g1219 Tan-Chr11:10203623 9.60E-115 dispersed
Tan07g0240 Tan-Chr7:5253099 Tan11g1219 Tan-Chr11:10203623 9.60E-102 dispersed
Tan07g0241 Tan-Chr7:5254154 Tan11g1219 Tan-Chr11:10203623 4.60E-72 dispersed
Tan11g1219 Tan-Chr11:10203623 Tan06g1074 Tan-Chr6:10036748 4.80E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24