Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1220 ATGGGGCATTGGACAGAGACGCTTGTGCTACTCGTGGTGATGAAGATAGCCATATTATCAACAGCCGGCTTGGACGTAGTAGCTTCTCAAGCCTTACCCGGGTGTGAGGAATGGTGCGGCGAGGTGCAAATTCCATATCCATTCGGCATGAGAAAAGGGTGTTATCTCAACGAAACTTTCTTGATTACTTGCAACAAAATCGATAACAATAAATCTTCAAAGGCGTTTCTAATGAACACCAATATTAGCGTTACCAATATATCTATCCACGGTGAGCTCCAGATTCTGCAGCCCATAGTGCGAAATTGCTACAAGCAAGTAGGTGGTCCTTTTGTTCCCAACACAACCGATCTTTGGTTGCCGGCCATGTACCCAATTGCCGATGCAAAAAACAAGTTCGTTACCATCGGCTGCGATACATTTGGTTTAATCGGCGGGGAGCTAAACGGGAATGGGTATGCAAGTGGGTGTATTGCGATGTGTCCAAACAATAATAGTAATATAGTTAATGGGTCGTGCTCTGGGAGTGGGTGCTGTCAGTTGGAGATTCCAAATGGGTTAAGGAATTTGAGTTTGGCAGTGGGAAGCTTGTTCAATCACTCTCACGTACTGGAGTTCAATCCCTGTGGGTATGCTTTTGTAATCGAAGATGAGGGGTTTGAGTTTTCATCAACTTATATTCAGAATTTTGAAGATGTGGAAGTTCCGCTTGTGCTTAGTTGGGCCATTGGAAAAGAAATAAATCATGTAGTATGTGGAGGAAACAGCACAATGAATAGTAACTTCTCTAATGATGGATCTCAATATCGTTGCCAATGCTTCGATGGTTTCGACGGGAATCCATATCTTCCTCTTCCTCAAGGATGCAAAGATATAGATGAATGCAAGGATGAAAGGCTGAATGAGTGTGAGTACAAGGACAAATGTGTTAACACGCCAGGAAACTATACCTGCGATTGTCCTACGAACTATAAAGGAGATGGAAGAAATGGGGGACAAGGTTGCACCCCAGATTCCAATTCTTCGTCCATTCCAATCATCATTGGAGTTGGAGTAGGGTTCACAGTTCTACTAATTGGCAGCATATTTATATACCTGGGTTACAAAAAGTGGAATTTCATCAAACAGAAAGAGAAATTTTTCCAAAAAAATGGAGGCTTCATACTTCAACAACAACTTTCTCAATGGCAATCACACAGTGACATTGTTAGAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACCAACAACTACGACCACAGCACTATCGTTGGCAAAGGTGGTTACGGTACCGTTTACAAAGGAGTCTTAGAGGATGGACTAACCGTTGCAATCAAGAAATCAAAATTCGTGGACCAATCTCAAACAGCCCAATTCATCAATGAAGTGATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTTCGGCTCTTGGGTTGTTGTTTGGAGACACAAGTTCCATTGTTGGTCTATGAGTTCATCACCAACGGCACACTCTTTGATCACATCCATGACAAAACAAAACACGTTTCCCTTTCATGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCCGGCGTCCTTTCATATTTGCATTCTTCAGCTTCTACTCCCATCATCCACAGAGATATCAAGACGACTAACATACTTTTAGACGATAATTACACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCATTGGATCAAACTCAGGTATCCACGATGGTGCAAGGGACTCTTGGATATTTGGATCCTGAGTACTTGTTGACAAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTCTTGAACTTATAACTGGGAAGAAGGCGGTGAGTTTTAATGGGCCTGAAGAAGAGAGAAATCTGGCCATGTATGTGCTGTGTGCAATGAAAGAAGATCGCTTGGAAGAAGTGGTGGAGAGAGGAATGGTGAGAGAGGCAAGTTTTGAGCAAATAAAAGAAGCGGCTAAGCTAGCAAAGAAGTGTTTAAGAATTAAAGGAGAAGAGCGACCTAGCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGCGAGGAATGAAGAAGGTTGAGCATTTATCCAACACAGAAGAGACGGTATATTTGTTGGATGGAGCTTCAGATTCGTCCCAATTTGCTGCGAGTGACAGTGTCAATACTGTAGGCGACAGTATGAAAGCTCGAATTTTGTCTAATATCCACGATGGAAGATGA 2235 42.91 MGHWTETLVLLVVMKIAILSTAGLDVVASQALPGCEEWCGEVQIPYPFGMRKGCYLNETFLITCNKIDNNKSSKAFLMNTNISVTNISIHGELQILQPIVRNCYKQVGGPFVPNTTDLWLPAMYPIADAKNKFVTIGCDTFGLIGGELNGNGYASGCIAMCPNNNSNIVNGSCSGSGCCQLEIPNGLRNLSLAVGSLFNHSHVLEFNPCGYAFVIEDEGFEFSSTYIQNFEDVEVPLVLSWAIGKEINHVVCGGNSTMNSNFSNDGSQYRCQCFDGFDGNPYLPLPQGCKDIDECKDERLNECEYKDKCVNTPGNYTCDCPTNYKGDGRNGGQGCTPDSNSSSIPIIIGVGVGFTVLLIGSIFIYLGYKKWNFIKQKEKFFQKNGGFILQQQLSQWQSHSDIVRIFTQEELEKATNNYDHSTIVGKGGYGTVYKGVLEDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLFDHIHDKTKHVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPLDQTQVSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFNGPEEERNLAMYVLCAMKEDRLEEVVERGMVREASFEQIKEAAKLAKKCLRIKGEERPSMKEVAMELEGLRGMKKVEHLSNTEETVYLLDGASDSSQFAASDSVNTVGDSMKARILSNIHDGR 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10227376 10231440 + Tan0000048.1 Tan11g1220 768157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1220 744 CDD STKc_IRAK 424 691 - -
Tan11g1220 744 ProSiteProfiles Protein kinase domain profile. 418 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1220 744 Pfam Protein kinase domain 419 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1220 744 SUPERFAMILY Protein kinase-like (PK-like) 396 688 IPR011009 -
Tan11g1220 744 SMART serkin_6 418 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1220 744 SMART egfca_6 291 336 IPR001881 GO:0005509(InterPro)
Tan11g1220 744 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Tan11g1220 744 Pfam Wall-associated receptor kinase galacturonan-binding 35 91 IPR025287 GO:0030247(InterPro)
Tan11g1220 744 CDD EGF_CA 291 327 - -
Tan11g1220 744 Gene3D Transferase(Phosphotransferase) domain 1 494 716 - -
Tan11g1220 744 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Tan11g1220 744 Pfam Calcium-binding EGF domain 291 328 IPR049883 -
Tan11g1220 744 SUPERFAMILY EGF/Laminin 291 329 - -
Tan11g1220 744 ProSitePatterns Calcium-binding EGF-like domain signature. 291 318 IPR018097 GO:0005509(InterPro)
Tan11g1220 744 FunFam Fibrillin 2 286 331 - -
Tan11g1220 744 Gene3D Laminin 251 329 - -
Tan11g1220 744 FunFam Wall-associated receptor kinase 2 494 709 - -
Tan11g1220 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan11g1220 744 ProSiteProfiles EGF-like domain profile. 291 330 IPR000742 -
Tan11g1220 744 FunFam Wall-associated receptor kinase 2 388 493 - -
Tan11g1220 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Tan11g1220 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 701 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3290 Tan-Chr1:88338933 Tan11g1220 Tan-Chr11:10227376 6.50E-184 dispersed
Tan11g0213 Tan-Chr11:1784671 Tan11g1220 Tan-Chr11:10227376 2.50E-78 dispersed
Tan11g1220 Tan-Chr11:10227376 Tan09g1144 Tan-Chr9:63759171 1.40E-61 dispersed
Tan11g1218 Tan-Chr11:10164484 Tan11g1220 Tan-Chr11:10227376 4.50E-280 proximal
Tan11g1220 Tan-Chr11:10227376 Tan11g1221 Tan-Chr11:10249675 1.40E-266 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68205 PF00069 Pkinase 4.00E-49 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1220 - - - 0.0