Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1236 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAATCGTTTCGCGGCTCTGTTACTCGACGGGTCGGCTGTTCGAGTCAACCTCTTCCCAAGCAGCCGTCACGCCAGGGGATGGCTTCCTCTCCATCTAATTCTAGTGAGGGCCAGATGTTTGAACCAGATAGGGGGCTGGGAGTGATTACGACTAATATCTGCACGAATGCATCGGAGCCAGCTGCTGGAGGGGAGGATTGGACATTCAGAGGCCCCGAACATGCAGATACTCTACTATTGGATGAAAGGTTGGATAGTGATTCCGGCGACAGTTATCCCTGTCTAAACGAGGAGAATGAGGGTTGCAACTTGGGGAATAGACCATTAAGCTTGGATATGGAAGAGTCTCAAGACGTTGGTGGTTTGGTTGATATTTTGGGCTGTAAAACTACCATGGAGATGATGTCTTTAACTGGGTCATTAGTAAATTCTGATAAACCCGATGAACTGGATATTAATAGTCTCATAGTTGATGCTGCTGCAAAAGTTGAAAGAGACGATACTGTAGAAAATGATCCGATTTTAGCAGGGATGTGTACTTGTACAGACGACTTGAAATTTCCTTCTCAAGTCTGTGAAATTGTTTCTAAATCAGCTTCTGCCGACGGATTGCCAAGTGATTTCATACAACAAAGCGAGCTGGAAAATGATGCCGCTGGTTGTTCATTTTCAGAGGTCGCAGACGGGATAACTGATGCTTCGGTTGTAATAGAAGCAGACATCCTGAATGAGATGTCCCCTTTACAGAGTGGTCAAATACTATCAGTACGTGTGGAACAATCAGTTGCCAATTGTGACCAGTATATTTGCGAGATGGATGGGAAGAGCTTAAGTGGTGGTACCTCTGGAGAAACAGTTACGGAAGTTGCTGATATGAACAGCAATCCTGAATTGTGCTTGCAAATGTTGCCTTCACAAGGCTGCGAGAATATAAGGGAATGGTTACAATCTGATGGTTCACCACTAACTATCCACGCTCTAGAGAATAATCAGTGTGATGAAAAGCATGACAGTGATTCCTTATCCAAGTACATTTCAGAGCTTGTAGAAGATGATATTGATGTCTTTAATAATAATGGTGATGCTGGACAACATATAGATCCCAAGATTGAAAATGACCATAATCTGGAGGAAGCTACTATTCAAGTGAACCCCAACTGTGTAATTGCATCGCCCTTGCCTTCTCAGCCCCTTAATTTTGAAAAAGATGAATTTTCTGAGATGTTGAAAGGAGCAGATATTCCAATAAAGGATATTAGTTCTGTTAATTCATGCAGTGTCAGCGATCAAGACAACAATGACATAGAGAAAGTTGGTTGTGTTTCTGAAGTTAAGTGTCCTGAAACAGTTATCACATCCTCTAAGAGGAGTGGTCGAAGGAAAACATCAAGCCAAAAAACCGTGACAAAAAGGGCATCAAGGAAAAGCAAAAAAAAAGTGCCAGAGGCACTGAGTTTTGACACTGCAAGAAGGAGGAGAAGCTCTATATCTAGGCCTGCTCGTCCTTCACCCTGGGGATCGCTGGGCTATATTATTCAGTCATTTGAAAGAATTGACAATGTTCTAGTAAATCAAAGCCAGAAGCAAGGAAATAAGAAATCTATAGGTAATCAAGGAGGTACCAAGCAGAATAAGAAACAGCCAAGTGAAAGTTCGTATAGATCAAGAAAAGAAGGGACCGATGGAAAATGTGCTACTTCAACTTCAACCAATCGTATTCGTTTGAAGGTTAAATTAGGTAAGAATGTGGGTCATAATTTTCTGAACATTGTGGTTCCCGAGGTTGTTGATTCATCATTGTCTGCCAAGGGTATCAATTGCATTTATGGGAACGAATCATTTTGGGAAGGTAATTTGGAATTTCCACCATCAACTCTTGGCGTTGATGATCAAAAGCCTGAAGAGGAGCATTTAAGAAAGATCTTTTGCTACAGCAGGAATCAGGAGAAAGAAGAGAAATGTCCTGATACTTCTGTTGCAAAGGAACAATGTGCTAATAATGACTCAGGTTGCACCATTATTGTAGACAAGTCATCTGCAAAACATGCAGATGATAATCTGTGTGTTTCCTCCCATTTGGTTGAGCCTGTAGAAGGGGCTAGTGATACCAGGAGTTTGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATTTTAGATATTCAAGTTGGAGCAATACGTCAGGAAAATTTGCACGACTCAGTTTTGGCATCCTTAGAAGATTTTGCTGCTTCTGGGCATTTTACCAGTAGTAAGAAAGGAAGGAAGAAGGAGAAGCCCTGCGAGGCAGTTAGTTGTTCTCCAGAGGGTGGCACAGGTGCTTCTGCTTGCAGTAGCAGGTCCAAATCATCAAAGAAGCATGGAAGAAGACTGAATGTGGACAATCAGCTTGGTTCTGATATTCAACTTCCAGAAGAGGCTTCGAAAGCGGAAGGCATTCTTGAAGTTAAAGAATGTTGCAGAACAGATGTTGGCAGTGTGTTTCCTGCATCAGAGAATTCAAAAACATTTCTTCCCTCTCAATCTGCAAGGAAGAAACATACCAAAAGTTCAAAACCTATTAAAACAAGTAAAGGCAAGTCCAAGGCTCCTGGCTCAAAAAACAAAATAAAGAATGCTTCTAAAGAGAGGGTTTACCAACGGAAGTCTGTTAATAAGAGTAAAATCAAGAAGGCTATATGTGAACAAGTTGTGACTGAAACGGAAAGTCACCAAATAGTAGGAAATTGCCTTGTAGACAAGCCCGAGAAAAGCGATGACATCATTGCATCCACTGTGGCAGTAAATTTGAATGTGGTACAGGGTGCTGTGAATGAGCAGTATATACCTCCTCGCAATGCTTGGGTGCTCTGCGATGATTGTCATAAATGGCGACGCATACCAGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTGATTGCTCAATCCCACAAGAGAAGTCAAATGCTGAGATTAATGCAGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTATAGGGAATTAGAGAGTTTTCATCCAACAACAGTGACTGCAGCTCCTCAAGAGAACAAATTTGCTTCCATTAGTAGCAATCAGTTTTTGCACCGCAGTCGTAAAACTCAAACTATTGATGAGATAATGGTTTGTCATTGCAAACCAGCTTTGGATGGTCGGTTAGGTTGTGGAGATGAATGCTTGAATCGAATGCTCAATATAGAATGCGCTCGAGGAACATGTCCTTGTGGTGACCTTTGTTCTAATCAACAGTTCCAGAAACGCAAGTATGCCAAATTACGGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTACAGTTGCTTGAGGATATAACAAAAGGACGATTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGTCAAAAGGAGTATGCGTTGAATGGGCATCGACATTTTTACTTCATGACACTAAATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTCATTAACCACAGTTGTGATCCAAATTGCCGCACGGAAAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCGCTAAGGGATATTAAGAAGGGTGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCCAAAAAATGTTATTGTGGTTCTTCCCAATGCCGAGGTTATATAGGTGGAGATCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTTCCAGAACCAGTAATGCTTCGTGCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTCGTTGGATGGTGCTAAAATGCAACCCTCAGAGCGTATAAGAGGGGTTAGGGAGAAGAGAGAACAACCTATCAGTATAGCTTTCGAATCAAAGATTTCAGAAGAAAAAGAGGATCCTCTTAAGGTTTCTGCTTTGAAGATTTCAGAAGAAAAAGAGGATCCTCTAAAGCTTTCTGCTTCGAAGATTTCAGAAGAAAAAGAGGATCCTCTCAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCACTGGAATTTGAAGACTCAAAGGTAGCGTCACCTATTCCACTGCCGGAAATTACCCAACAGAGTGAAGATGTGACGAGCAAACCTGTGTTTGTTGATCAGACAGAAATATCTCTTGTGGACAGTATTTCTGACAAAAACACATGCTCTATTGAGCAGGAGGCAAAGTTATCATTTGATGACATTGATGCTCATAAGAAATCCAAGCTGGATGCTGTTGAAGATAAGCAAGTGTATATAAAGTCGCATCCTCGGATGAAAACTTCGCGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCTGTGGAAAAAGTTCAAATAACTAACAAGTCCCAGATTTCGTCTGTAAAGCCCAAGCGATGGATTGAAGGTTCTCCGGGTAACCGCTTTGAGGCAGTTGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTCCTGACTGCTGCATCAGGTGCAAGTGCCAGTGGTGAAGCAATTCAGAGCAATCGGGATCTTTCAATGATCCTTGATGCACTTTTGAAGACAAAATCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGCTGCATAATATAATGAAGCAATACAGAAGTGACTTCAAGAAGATACCTATTCTTCGGAAGCTTTTGAAGGTCTTAGAATACTTGGTGATGAGAGAGATACTCACCTCAGAGCATATTAATGGTGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGAGTCTTTACTGTCACTGACAGAGCATGATGACAAACAGGTACATCAAATTGCTCGAAGTTTTCGAGACAGATGGTTCCCCAGACATAATAGAAAATTTGGTTACTCTGAGAGGGAGGATGGGAGATTGGAAACTTACAGGGGTTCGAACTGCAGTAGGTTTACAGCTTCACACAGTTATCGGCATGATCAGGATTCCAGACCCACGGATGCAATTGACTGTGTTAAGCAGTCGTTAATGCCAGCATCTTTGCCAGATGCTCCTGCAGAGGTCTGTTCTGTGGCTTCTACAGCTGGTCACTCATTGAATGGACAAAAAATTCGTAAGCGTAAGAGTCGATGGGATCAACCTGCAGACACAAGCCTAGATCTGAGATCGAAGGAGCAGAAGCTTGAATCAACATCAGTGCAGCAATTTGATTCCAGCCAATTAAATAGTGTTGGAGTGGCACCAATGTTGATAGACAAGGTAAACAGTGAAGATAAGGACTCCCTCTCTGATTATGTTGAAGTATGTTGTCGCCAAGATGGAGATATTAGGGCAGACAGTGCAGTGCAAAACATCCCTGAAGATATTCCTCCTGGATTTTCATCGCCCTTCAATGTCCCCGTGGCTTCCTCAAGTCCTTTTTCAACAGTTTTAGATCCTCCTCGACAGATTATTGGCAATTTGAGTGTTGCTTTTTCCACAGTTGGGCATCCACAGGAAAGATTTATTTCTCGCTTGCCTGTGTCCTATGGAATTCCGTTTTCTATCATTCAGCAATGTGGAACATCCTGTGCAGAGAATCTGGACTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCTTGCCACCATATCCCCGAGGTAAGAGAGGCTCGCCGATGTCTGCCTGTGGTACCGAAGTTAGACAATCTGCTCAAGAAGAGCAGGTCAACAGCCACGATTCTCGATCTTCTTTCTCAGAAGAAAGCACTCCTAGTACAAGTACTAATTACCAACAGGATTTGAGCATTCTATCAAACAACCAACAGATATTGAAACGGTCTAAGGAATCATCGTATGATTTGGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACAAAGTTTGGCCCCCCTTGGTTACAGAGAAGGAATCAGTGGGGATACCAGGGGAACTTCAGGGGTGGGGCGAGCACTATGGGTGATGACAATATACCAAACGAAGGGATAAGTCCATATTGCTCAGATGAAGCAAGCGTTAGAGTGGATAAAGCTAATGATGATTCTTATCAGCGTTGA 6228 42.49 MGSCDDPAVIGESFRGSVTRRVGCSSQPLPKQPSRQGMASSPSNSSEGQMFEPDRGLGVITTNICTNASEPAAGGEDWTFRGPEHADTLLLDERLDSDSGDSYPCLNEENEGCNLGNRPLSLDMEESQDVGGLVDILGCKTTMEMMSLTGSLVNSDKPDELDINSLIVDAAAKVERDDTVENDPILAGMCTCTDDLKFPSQVCEIVSKSASADGLPSDFIQQSELENDAAGCSFSEVADGITDASVVIEADILNEMSPLQSGQILSVRVEQSVANCDQYICEMDGKSLSGGTSGETVTEVADMNSNPELCLQMLPSQGCENIREWLQSDGSPLTIHALENNQCDEKHDSDSLSKYISELVEDDIDVFNNNGDAGQHIDPKIENDHNLEEATIQVNPNCVIASPLPSQPLNFEKDEFSEMLKGADIPIKDISSVNSCSVSDQDNNDIEKVGCVSEVKCPETVITSSKRSGRRKTSSQKTVTKRASRKSKKKVPEALSFDTARRRRSSISRPARPSPWGSLGYIIQSFERIDNVLVNQSQKQGNKKSIGNQGGTKQNKKQPSESSYRSRKEGTDGKCATSTSTNRIRLKVKLGKNVGHNFLNIVVPEVVDSSLSAKGINCIYGNESFWEGNLEFPPSTLGVDDQKPEEEHLRKIFCYSRNQEKEEKCPDTSVAKEQCANNDSGCTIIVDKSSAKHADDNLCVSSHLVEPVEGASDTRSLDPGTSPDSEVINSILDIQVGAIRQENLHDSVLASLEDFAASGHFTSSKKGRKKEKPCEAVSCSPEGGTGASACSSRSKSSKKHGRRLNVDNQLGSDIQLPEEASKAEGILEVKECCRTDVGSVFPASENSKTFLPSQSARKKHTKSSKPIKTSKGKSKAPGSKNKIKNASKERVYQRKSVNKSKIKKAICEQVVTETESHQIVGNCLVDKPEKSDDIIASTVAVNLNVVQGAVNEQYIPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFADCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTAAPQENKFASISSNQFLHRSRKTQTIDEIMVCHCKPALDGRLGCGDECLNRMLNIECARGTCPCGDLCSNQQFQKRKYAKLRWLRCGKKGYGLQLLEDITKGRFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSSQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRADGRSWNNNLPTAVSSLDGAKMQPSERIRGVREKREQPISIAFESKISEEKEDPLKVSALKISEEKEDPLKLSASKISEEKEDPLNLSASTISPLHSSLEFEDSKVASPIPLPEITQQSEDVTSKPVFVDQTEISLVDSISDKNTCSIEQEAKLSFDDIDAHKKSKLDAVEDKQVYIKSHPRMKTSRKPGSIKKGKVSSVEKVQITNKSQISSVKPKRWIEGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVMREILTSEHINGGPPCPGMESLRESLLSLTEHDDKQVHQIARSFRDRWFPRHNRKFGYSEREDGRLETYRGSNCSRFTASHSYRHDQDSRPTDAIDCVKQSLMPASLPDAPAEVCSVASTAGHSLNGQKIRKRKSRWDQPADTSLDLRSKEQKLESTSVQQFDSSQLNSVGVAPMLIDKVNSEDKDSLSDYVEVCCRQDGDIRADSAVQNIPEDIPPGFSSPFNVPVASSSPFSTVLDPPRQIIGNLSVAFSTVGHPQERFISRLPVSYGIPFSIIQQCGTSCAENLDCWDVAPGVPFHPFPPLPPYPRGKRGSPMSACGTEVRQSAQEEQVNSHDSRSSFSEESTPSTSTNYQQDLSILSNNQQILKRSKESSYDLGRRYFRQQKWRNTKFGPPWLQRRNQWGYQGNFRGGASTMGDDNIPNEGISPYCSDEASVRVDKANDDSYQR 2075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10485826 10522204 - Tan0020858.1 Tan11g1236 768173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1236 2075 CDD SET_SETD2 1124 1266 IPR044437 GO:0046975(InterPro)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 462 514 - -
Tan11g1236 2075 Pfam AWS domain 1087 1122 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 1946 1981 - -
Tan11g1236 2075 FunFam Histone-lysine N-methyltransferase 953 1014 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 1304 1325 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 537 559 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 772 817 - -
Tan11g1236 2075 ProSiteProfiles AWS domain profile. 1073 1123 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 537 578 - -
Tan11g1236 2075 FunFam Histone-lysine N-methyltransferase 1020 1280 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 1758 1779 - -
Tan11g1236 2075 PANTHER SET DOMAIN PROTEINS 395 1951 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 489 505 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 1752 1779 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 19 50 - -
Tan11g1236 2075 ProSiteProfiles Post-SET domain profile. 1250 1266 IPR003616 -
Tan11g1236 2075 Gene3D - 958 1018 - -
Tan11g1236 2075 Pfam SET domain 1136 1242 IPR001214 GO:0005515(InterPro)
Tan11g1236 2075 Gene3D SET domain 1021 1282 IPR046341 -
Tan11g1236 2075 SMART shorttest3 1073 1124 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Tan11g1236 2075 Pfam CW-type Zinc Finger 961 1007 IPR011124 GO:0008270(InterPro)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 15 54 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 1931 1981 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 470 488 - -
Tan11g1236 2075 MobiDBLite consensus disorder prediction 844 894 - -
Tan11g1236 2075 ProSiteProfiles Zinc finger CW-type profile. 955 1009 IPR011124 GO:0008270(InterPro)
Tan11g1236 2075 ProSiteProfiles SET domain profile. 1125 1242 IPR001214 GO:0005515(InterPro)
Tan11g1236 2075 MobiDBLite consensus disorder prediction 2035 2075 - -
Tan11g1236 2075 SMART set_7 1125 1248 IPR001214 GO:0005515(InterPro)
Tan11g1236 2075 SMART PostSET_3 1250 1266 IPR003616 -
Tan11g1236 2075 SUPERFAMILY SET domain 1054 1263 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1236 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0297 Tan-Chr2:2522250 Tan11g1236 Tan-Chr11:10485826 6.80E-12 dispersed
Tan02g0298 Tan-Chr2:2522250 Tan11g1236 Tan-Chr11:10485826 6.80E-12 dispersed
Tan11g1236 Tan-Chr11:10485826 Tan11g1238 Tan-Chr11:10485826 0.00E+00 dispersed
Tan11g1236 Tan-Chr11:10485826 Tan11g1237 Tan-Chr11:10485826 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28720 PF00856 SET 1.20E-17 No_clan Tan TR