Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1250 ATGTCCGCCCATAATCGTCGCCCGTCGTTTTCGTCGTCGACGTCATCATCGTTGGCTAAACGACAAGCGTCGTCGGCTTCGTCGTCCGACAATGTCGGAAAGGTTATGGCGGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTTGGTAACCTTACGAATTTTAAGAATGTGTCTCATAGTGCTGCGAAAAGCTCTGTTCCGCCCGCTGTTATGGTGCCATGTGCAACCAAAGCTGTCAAGGCCAGAAAGAGTTCCCCTGCAAGAACTCGTAGCACAAACTTGCCAACGAATAATACACCGGCATTGCTCGATGTCAAAACGACAAGTGCAGTTGCCCCTAGCAATGTCACAGCTTTCTCAAGAACTGATGCCACTGCTGTCTCAAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTCTCAGTTTCTTTAGATGAAACTATGTCTACTTGTGATTCCTTCAAGAGCCCTGATGTCGAGTACATGGACAACAATGATGTCCCAGCAGTTGATTCCGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCACGCACCAATTAATAGTCAGGCACCAATTAAAGGTAGTATATGCAATAGAGATGTACTTGCAGAAATGGAAACAGATGGGGACATCATTGATGTCGATACAGATTTCATGGATCCTCAACAATGTGCTACGATTGCTTGTGATATTTACAAGCATTTGCGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGACTTCATGGAAAAAATTCAGAAAGATATAAATTCAAATATGCGGTCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGATACTCTATATTTGACTGTGAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCTCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGAAGAGGTATTGCAAATGGAATCGTCTGTCTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACACCAAAATGTTTCTTAAGACGATTTGTTCGTGCTGCTCAAGGTGCCGATGAGGTTTCATCAATGCAGTTGGAGTGCTTGTCCAACTTCCTTGCCGAATTATCTCTTTTAGAATACGGTATGCTCTGCTACGCCCCATCGCTCGTTGCTGCCTCAGCGATATTCTTGGCAAAGTTCATTCTTCTCCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACACATTATCAGCCATCCGATCTCGTCGACTGCGCTAAGGATTTACATCGCCTCTGCTGTAACACCCATAATTCTACCTTACCAGCAATCAGGGAGAAATACAGCCAGCATAAGTACAAACACGTAGCGAAGAAGTACTGCCCTCCGACGATACCTCCCGAGTTCTTCCAGAATCAAACACAGTAG 1503 44.31 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAVMVPCATKAVKARKSSPARTRSTNLPTNNTPALLDVKTTSAVAPSNVTAFSRTDATAVSSSMDVSPTKSDGVSVSLDETMSTCDSFKSPDVEYMDNNDVPAVDSVERKTKSSLCISGHAPINSQAPIKGSICNRDVLAEMETDGDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRSILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGADEVSSMQLECLSNFLAELSLLEYGMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCAKDLHRLCCNTHNSTLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10640351 10643503 - Tan0017289.1 Tan11g1250 768187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1250 500 Gene3D - 249 362 - -
Tan11g1250 500 PANTHER CYCLINS 217 475 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan11g1250 500 MobiDBLite consensus disorder prediction 1 34 - -
Tan11g1250 500 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Tan11g1250 500 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Tan11g1250 500 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Tan11g1250 500 MobiDBLite consensus disorder prediction 82 101 - -
Tan11g1250 500 FunFam Mitotic cyclin 6 249 349 - -
Tan11g1250 500 FunFam Cyclin A1 351 483 - -
Tan11g1250 500 PIRSF Cyclin_A_B_D_E 4 493 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan11g1250 500 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Tan11g1250 500 MobiDBLite consensus disorder prediction 1 32 - -
Tan11g1250 500 CDD CYCLIN_AtCycA-like_rpt2 364 478 - -
Tan11g1250 500 Gene3D - 235 483 - -
Tan11g1250 500 SMART cyclin_7 368 456 IPR013763 -
Tan11g1250 500 SMART cyclin_7 271 355 IPR013763 -
Tan11g1250 500 SUPERFAMILY Cyclin-like 364 490 IPR036915 -
Tan11g1250 500 MobiDBLite consensus disorder prediction 86 101 - -
Tan11g1250 500 SMART Cyclin_C_2 364 487 IPR004367 -
Tan11g1250 500 Pfam Cyclin, C-terminal domain 364 484 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1771 Tan-Chr2:82199619 Tan11g1250 Tan-Chr11:10640351 3.20E-78 dispersed
Tan02g1772 Tan-Chr2:82199619 Tan11g1250 Tan-Chr11:10640351 1.10E-73 dispersed
Tan04g1482 Tan-Chr4:19004561 Tan11g1250 Tan-Chr11:10640351 3.70E-15 dispersed
Tan04g1483 Tan-Chr4:19004561 Tan11g1250 Tan-Chr11:10640351 2.90E-08 dispersed
Tan05g0055 Tan-Chr5:582263 Tan11g1250 Tan-Chr11:10640351 1.10E-47 dispersed
Tan06g0344 Tan-Chr6:2682305 Tan11g1250 Tan-Chr11:10640351 4.10E-84 dispersed
Tan11g1250 Tan-Chr11:10640351 Tan01g3680 Tan-Chr1:101634757 5.90E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1250 K06627 - csv:101221569 916.376