Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1255 ATGGAAGAGCAAGAGGATAAGCAACTTCCCCAAAGGATTTCCTTTGCTCATGTGGATCAGGTGAACTCAGATTTTATCATGGCCTTGGCAATGCAGCAGCAGGAGCACGAGCGGGCCTATACAATGCTTGAGACCATCGAAAGTGACAGCGATGAAGACGAACGTTCAGATTCCAACATCAACAATGGTCTTGATAACACCAATGACTCCTTGCAAAGCCAAGAACTTCGTTCCCGGTGGGATTTTCTTACAGATGACGAGGAGACTACTGATGAAAATGAAGATATGGATGAAGATGAAGAGGAGGATATCGAGGACTTTGATTTGGATGAGCTAAGCTATGAAGAGTTGATTGCATTAGGGGAGTTCATTGGAGAAGAAAAGAGGGGGCTACCGATGAATGAAATACCTCCGTGCTTGCACCCGAGCAAGTATCGATCCATCGAAAACAGAAGTGGTATAGATCGGTGTGTGATTTGCCAAGTTGAATATGAAGATGGTGAAGAATTAGCTTCTCTTCCTTGTGAGCATCCTTACCATTCAGAGTGTGTAAGCAAATGGCTTGAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAAGGCTTCTAAAAATGCATGGTAA 636 43.87 MEEQEDKQLPQRISFAHVDQVNSDFIMALAMQQQEHERAYTMLETIESDSDEDERSDSNINNGLDNTNDSLQSQELRSRWDFLTDDEETTDENEDMDEDEEEDIEDFDLDELSYEELIALGEFIGEEKRGLPMNEIPPCLHPSKYRSIENRSGIDRCVICQVEYEDGEELASLPCEHPYHSECVSKWLEIKRVCPICGTEVSSPKASKNAW 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10711588 10712223 + Tan0004554.1 Tan11g1255 768192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1255 211 MobiDBLite consensus disorder prediction 41 104 - -
Tan11g1255 211 Pfam Ring finger domain 156 197 IPR001841 -
Tan11g1255 211 MobiDBLite consensus disorder prediction 60 78 - -
Tan11g1255 211 MobiDBLite consensus disorder prediction 85 104 - -
Tan11g1255 211 SMART ring_2 157 197 IPR001841 -
Tan11g1255 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 207 IPR013083 -
Tan11g1255 211 SUPERFAMILY RING/U-box 156 204 - -
Tan11g1255 211 ProSiteProfiles Zinc finger RING-type profile. 157 197 IPR001841 -
Tan11g1255 211 FunFam E3 ubiquitin ligase BIG BROTHER-related 123 204 - -
Tan11g1255 211 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 3 101 IPR043312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1255 K19045 - - csv:101217935 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0420 Tan-Chr4:3505000 Tan11g1255 Tan-Chr11:10711588 1.40E-21 dispersed
Tan05g2229 Tan-Chr5:73232611 Tan11g1255 Tan-Chr11:10711588 3.60E-16 dispersed
Tan09g0859 Tan-Chr9:59799424 Tan11g1255 Tan-Chr11:10711588 1.60E-17 dispersed
Tan09g0860 Tan-Chr9:59799954 Tan11g1255 Tan-Chr11:10711588 1.60E-17 dispersed
Tan11g0738 Tan-Chr11:6294827 Tan11g1255 Tan-Chr11:10711588 2.10E-07 dispersed
Tan11g1255 Tan-Chr11:10711588 Tan07g0741 Tan-Chr7:11806206 8.70E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36