Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1257 ATGTCGGAAGTAATTGCAGTCATGGATATTGACTACAATAATGGCAACAATGAAGCTGAAAACTCAGCCAAGGGCAAAAATGTCGCCAGTCCCGCCGCCGCACCCGACGGCAAGGCGATACCCTGGGTCGAGAAGTTCCGGCCTAAGTCTCTCGCCGATGTTGCTGCTCACCGCGACATTATTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCCCGCAAGCTTTATGGAACGAACTACCACAACATGATACTGGAGCTGAACGCATCAGATGATAGAGGAATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAGGCATCTGTAAAATTGATACTACTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACGAAAAATACAAGGTTTGCTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTTCGATTTGCTCCCCTTGACAACTTCCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTGACTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGGAAATCCAATGCCCAAAGACATCGAGCAAATATCATTTTGGCTGCTGA 777 45.69 MSEVIAVMDIDYNNGNNEAENSAKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIIDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLILLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALNILQEIQCPKTSSKYHFGC 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10727153 10731283 - Tan0005786.1 Tan11g1257 768194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1257 258 CDD AAA 60 198 - -
Tan11g1257 258 Gene3D - 202 253 - -
Tan11g1257 258 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 245 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Tan11g1257 258 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Tan11g1257 258 FunFam Replication factor C subunit 5 34 199 - -
Tan11g1257 258 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan11g1257 258 CDD HLD_clamp_RFC 203 243 IPR047854 -
Tan11g1257 258 MobiDBLite consensus disorder prediction 16 35 - -
Tan11g1257 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 246 IPR027417 -
Tan11g1257 258 Gene3D - 36 198 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1011 Tan-Chr1:9777152 Tan11g1257 Tan-Chr11:10727153 5.90E-09 dispersed
Tan01g4059 Tan-Chr1:105531960 Tan11g1257 Tan-Chr11:10727153 7.80E-47 dispersed
Tan03g0580 Tan-Chr3:60519465 Tan11g1257 Tan-Chr11:10727153 7.20E-09 dispersed
Tan03g0581 Tan-Chr3:60519465 Tan11g1257 Tan-Chr11:10727153 7.20E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1257 K10756 - csv:101217230 462.225