Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1279 ATGGAAAGAAGAAAATGGCCATGGAAGAGAAAGTCATCTGATAAGAGCCCTGGAGAAACTGAAAGTTCTGGTTCAATGTCATCGTATTCTGAGAGATTTTCCGACGAGCAGGACGCAGCCAAGTCATCTCCTAATCACGAGATCCAGTCTCCAGAAGTAACTTCAAAAGCAGTATGTAAGGAAGACATTGATGATGATTCACCAAAACAAGAAGATATCAGTGATAGTGTGAAGGATCTCACTGATCGGTTATCAGCTGCTCTTTTGAATGTGAGGGCAAAAGAAGACTTGGTAAAGCAGCATGCTAAAGTTGCTGAAGAAGCCATTGCAGGATGGGAAAAGGCAGAAAACGAAGTCGGACTTCTAAAACAGCAGCTTGGGACTACAGTTCAGCAAAAGTCTGCATTGGAAGATCGAGTGAGCCACCTTGATGGGGCACTCAAAGAATGTGTTAGACAGCTTAGGCAAGGAAGGGAGGATCAAGAGCAGAAGATTCGTGATGCGGTGGAGGAAAAAACCCGTGATTGGGAGTCCACCAAGGCGGATCTTGAGAGGCAGCTCCTTGAGCTCCAGAGCAAAGCAGATGCTGCTCAATCTGAATCTCCTAAAGTTGATCCTAGCCTTGGCAAAATGCTTGAGTCATTGAAAAGAGAGAATGCAGCCCTTAGGCATGAGCTTCATGCTCAATATAGGGAGTTAGAAACCAGGACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAGCATCTTGAGAGCATAAAGAAAATGGCCAAGCTCGAGGCCGAGTGTCGCAGGTTAAGAGTAATGTCATGCAAGCCATCATTAGTTAATGATCACAAATCTATAGCTGCTTCGACAATATCCATCGAGTCACTTACTGACACTCAATCAGACAATGGGGAGCAGCTTAATGCAGTGGATATTGATATAAGGAAAACCGAACGAAACAAATGTGAACCTAGTTGCTCAGACTCATGGGCTTCAACCTTAAGGGCGGAACTTAATCAGCCTGGGAATGAAAAGACTGTTAGCAGTAATCTTCCTTCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAGAGGCTTGCTTCGTTACCCGAAACTGACACAGGAAAGTGTCACCAAGAATCAGAAGCTTCTGCTTGCCCAACTGCTGAAGAAAGTGCCATGAGAACTGAGCTTGAGACCTTGCGACTCGAGAGATCTTTAATGGAAGAGAAGCTGGGTGAGTTAGAAGAAGCAAAGATTGAATTGGAAGAGAAGCTGAAACAAATGGAAGTGGAGAAGGATGAAATGGAAGACAGGCTAGAGATGATGGAAATCGATAGAGCTGAAGTGAATCAAATGTTAGCAAAGATGGAGATTGAGAAATCCGAATTGGGGCAAATGTTAGGGAAGATGGAAGAAGAGAAAGTTGAAATGGAAGAGAAATTAATGAAGTTGGAGGCGGAGAAAGATGACCTGGAGACTGCGTTATCCCAGAGTCAGAACTCTATTGACATTTCACAATCTCAACTCAAGGAAACAGAAATGAAACTGGAAAAGTTACAAAATGAGCTCAATATTGCGAATGAATCAAAACTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCAGAATCTCTGACCATGTCTGCAAAAGTTGGCATGTTGGAATCTGATATTCAAAAAGAGAGGGCTTCAGCATTGGCATTGACAGTCAAGTGTCAGGAACTAGAAGAAGAGCTCTCAAGAATTAAACAAGATGAAAAACAATCACAAAGTGAAATCTCCAAAAATGAATTGAAGATAAAGCAGGAGGATCTAGCTGTAGCTGCTGGGAAACTTGCAGAGTGTCAAAAGACAATTGCTTCTCTTGGGAATCAGCTTAAATCTCTAGCAGCACTCGAAGATTTTCTGATCGACACAACACAACTACCGGACTTCACAGCCGGTGAATCGCTTAACATTATGAGAGATGGTGATGAGCAATGCAAGCATTCGAATGGGACACTTTCACCCAAAAGAGATTCAGATTATACTAAAGTGGTTGATGACGATTCTGAACTATCAATGAGTAAGAATGAAGACGACTCGCCCCCATCTTCGTCTTCGTCAACTTCATCATCTGTGATTGCAAATCATGTTGTCAATTCTGAGAAAAACCGAAATGGTTTTGCAAAGTTTTTCTCTCGAACCAAGAGTGGGATAAAACTAGAAATTTAG 2229 42.35 MERRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDAAKSSPNHEIQSPEVTSKAVCKEDIDDDSPKQEDISDSVKDLTDRLSAALLNVRAKEDLVKQHAKVAEEAIAGWEKAENEVGLLKQQLGTTVQQKSALEDRVSHLDGALKECVRQLRQGREDQEQKIRDAVEEKTRDWESTKADLERQLLELQSKADAAQSESPKVDPSLGKMLESLKRENAALRHELHAQYRELETRTIERDLSTQTAETASKQHLESIKKMAKLEAECRRLRVMSCKPSLVNDHKSIAASTISIESLTDTQSDNGEQLNAVDIDIRKTERNKCEPSCSDSWASTLRAELNQPGNEKTVSSNLPSSLELDLMDDFLEMERLASLPETDTGKCHQESEASACPTAEESAMRTELETLRLERSLMEEKLGELEEAKIELEEKLKQMEVEKDEMEDRLEMMEIDRAEVNQMLAKMEIEKSELGQMLGKMEEEKVEMEEKLMKLEAEKDDLETALSQSQNSIDISQSQLKETEMKLEKLQNELNIANESKLRIESQLISMEAESLTMSAKVGMLESDIQKERASALALTVKCQELEEELSRIKQDEKQSQSEISKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTQLPDFTAGESLNIMRDGDEQCKHSNGTLSPKRDSDYTKVVDDDSELSMSKNEDDSPPSSSSSTSSSVIANHVVNSEKNRNGFAKFFSRTKSGIKLEI 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10914462 10918721 - Tan0015905.2 Tan11g1279 768216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1279 742 MobiDBLite consensus disorder prediction 696 718 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 662 695 - -
Tan11g1279 742 Coils Coil 563 597 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 57 77 - -
Tan11g1279 742 SUPERFAMILY Tropomyosin 408 631 - -
Tan11g1279 742 Pfam Filament-like plant protein, long coiled-coil 472 636 IPR008587 -
Tan11g1279 742 Pfam Filament-like plant protein, long coiled-coil 208 274 IPR008587 -
Tan11g1279 742 Pfam Filament-like plant protein, long coiled-coil 94 207 IPR008587 -
Tan11g1279 742 Pfam Filament-like plant protein, long coiled-coil 325 388 IPR008587 -
Tan11g1279 742 MobiDBLite consensus disorder prediction 376 397 - -
Tan11g1279 742 Coils Coil 402 541 - -
Tan11g1279 742 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 477 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 1 17 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 662 718 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 18 33 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 1 77 - -
Tan11g1279 742 Coils Coil 212 232 - -
Tan11g1279 742 Coils Coil 151 200 - -
Tan11g1279 742 MobiDBLite consensus disorder prediction 156 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1279 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1278 Tan-Chr11:10914462 Tan11g1279 Tan-Chr11:10914462 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47