Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1377 ATGACCGGAAGCAGCGGAAGAGAGGATCAGAACGGAAGCCGTCGGGCGGATTCCGATATTGAGGAGGAATTTAAGGTCGAAAGCGTTCGCGAACGGATTTCATCGTCGCGAGGGAGCCGATTCAATCTGATTCAGAAACAGTTGCGGATTGAGCCGACTCGCAGAAGATTTAGCCGCGAAAATCTCATCAATGGCATTAAGTGCCTCGTTATTCTCCCTGACAGCAGATGGTATAGGGCGTGGACAAAGTTTATTCTGATATGGGCAATCTACTCTTCCTTCTTCACACCCATGGAATTCGGTTTCTTTAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAACTTGCTTTCCTCATTGACATTGTTTTCCAGTTCCTCCTTGCTTACAGAGACAGTCAGACATATCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTTAGCTGTATGCCTTGGGATATCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTAAGATACCTCCTATGGATAAGGTTATTCCGGGTGCGGAAAGTCACTGATTTTTTTCAGACGTTGGAGAAGGATATACGTATTAATTATATGTTCACTAGAATTGTCAAGCTCCTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTCCTTCTCAAGAAGGGTACACCTGGATTGGAAGCTTAAAATTGGGAGACTACAGTTACTCAAATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTCACCATGGCTACTGTTGGTTATGGAGATATACATGCCGTCAACTTGAGGGAAATGATATTCATAATGATTTATGTGTCACTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGACAGATGTAATGAAATACATGAACAGAAATAGACTTGGCAGGGATATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATTCGTGCTAAGATTTCCCAAACATTATACTTGCCTTATATTCAGAATGTTTCTCTTTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAAACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTAGTTGATCAACTTTATTTTGTCTGTCATGGTGAGCTGGAGGAATTGGGCATAGGACAAAATGGTTCGGAAGAGACCATATCTTTACTGCAGCCCAACAGCTCTTTTGGAGAGATATCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGGCTCTTGCGCCTCGATAAGCAATCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATACCAATTAAAAGGTCTCGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGGTAAGGAGTAGACTCTGA 1761 41.06 MTGSSGREDQNGSRRADSDIEEEFKVESVRERISSSRGSRFNLIQKQLRIEPTRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLIDIVFQFLLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDIIYKACGKREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKLGDYSYSNFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSLDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVMKYMNRNRLGRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYIQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGELEELGIGQNGSEETISLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLVRSRL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12057878 12067371 - Tan0002268.2 Tan11g1377 768314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1377 586 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan11g1377 586 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan11g1377 586 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan11g1377 586 PRINTS EAG/ELK/ERG potassium channel family signature 223 233 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan11g1377 586 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan11g1377 586 FunFam Potassium channel KAT2 387 523 - -
Tan11g1377 586 FunFam Potassium channel SKOR 79 324 - -
Tan11g1377 586 PANTHER POTASSIUM CHANNEL AKT1 33 582 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Tan11g1377 586 Gene3D Helix hairpin bin 326 382 - -
Tan11g1377 586 SMART cnmp_10 399 517 IPR000595 -
Tan11g1377 586 MobiDBLite consensus disorder prediction 1 20 - -
Tan11g1377 586 Pfam Cyclic nucleotide-binding domain 419 503 IPR000595 -
Tan11g1377 586 Gene3D - 80 325 - -
Tan11g1377 586 Gene3D Jelly Rolls 383 523 IPR014710 -
Tan11g1377 586 ProSiteProfiles cAMP/cGMP binding motif profile. 399 519 IPR000595 -
Tan11g1377 586 Gene3D - 537 583 IPR036770 -
Tan11g1377 586 Pfam Ion transport protein 78 326 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan11g1377 586 SUPERFAMILY cAMP-binding domain-like 327 517 IPR018490 -
Tan11g1377 586 SUPERFAMILY Voltage-gated potassium channels 73 324 - -
Tan11g1377 586 CDD CAP_ED 399 513 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1376 Tan-Chr11:12056734 Tan11g1377 Tan-Chr11:12057878 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1377 K21867 - csv:101210912 1068.14