Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1396 ATGGCACTAGCAAATTCAGCTGTAGAAGAAGTCGATGGCATGGAGAAAGCAGGTGGTGGATATATGAAGTCTTTAGCCATTGGAAGCCATGAGAATTCAAATGCTAACTTTGTGTTTCGAAACACAACCAATTACCAACTTCAAAATCATCAGCAAATGTCTCAGTCTCTCATCAACTTCAAGTGTGGGATTGATCATCACAATATTCTTAATTTCCATAAGATCAGTAGTAGTAATGAATCTTTGCTGAGCTTTGAGCCACAAGACACTAATTACAATTGGAATCAGCAGCGACGTCTGATGGACGATCCCAATTGCTTTCAAACTTCTACCAATAATTACAGCTCTGAAAAAGAGAACAAAAATATTGCAGCTGATGCTTCTGTGTATGACTGGCTTTATTCTGAACCTACTGTTGTTTCTGATCCCATTCAAGACGCTCACGATGTACCTCAGGAGATTGCCAATCAAAAGCGACCCTATATGGGAGAGAGCAGTGGAGGTGTTTGTAAGAAGCAATGTACAGGTGGAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTCCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACGGATGAATTTTGGCCAGTTCAAGGTGGAAAAGCTCCTGATATTTCCCAAGTTAAGGAAGCCATTGATGCCATTCTTTCATCTCAAAGAGAAAGAAGCTCGAGCTCAAACAGTGAAAAGTGA 855 41.29 MALANSAVEEVDGMEKAGGGYMKSLAIGSHENSNANFVFRNTTNYQLQNHQQMSQSLINFKCGIDHHNILNFHKISSSNESLLSFEPQDTNYNWNQQRRLMDDPNCFQTSTNNYSSEKENKNIAADASVYDWLYSEPTVVSDPIQDAHDVPQEIANQKRPYMGESSGGVCKKQCTGGAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSEK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12413439 12416373 + Tan0015943.1 Tan11g1396 768333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1396 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983(InterPro)
Tan11g1396 284 SMART finulus 193 242 IPR011598 GO:0046983(InterPro)
Tan11g1396 284 Gene3D - 180 244 IPR036638 GO:0046983(InterPro)
Tan11g1396 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 43 254 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1396 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 246 IPR036638 GO:0046983(InterPro)
Tan11g1396 284 CDD bHLH_AtIND_like 188 250 - -
Tan11g1396 284 Pfam Helix-loop-helix DNA-binding domain 195 237 IPR011598 GO:0046983(InterPro)
Tan11g1396 284 MobiDBLite consensus disorder prediction 179 193 - -
Tan11g1396 284 FunFam Transcription factor bHLH83 185 244 - -
Tan11g1396 284 MobiDBLite consensus disorder prediction 160 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0640 Tan-Chr1:6143738 Tan11g1396 Tan-Chr11:12413439 2.80E-18 dispersed
Tan02g1741 Tan-Chr2:81174060 Tan11g1396 Tan-Chr11:12413439 1.60E-18 dispersed
Tan05g2748 Tan-Chr5:79504350 Tan11g1396 Tan-Chr11:12413439 1.10E-09 dispersed
Tan06g0202 Tan-Chr6:1768502 Tan11g1396 Tan-Chr11:12413439 2.00E-12 dispersed
Tan11g1396 Tan-Chr11:12413439 Tan08g0367 Tan-Chr8:3281662 8.10E-13 dispersed
Tan11g1396 Tan-Chr11:12413439 Tan02g1022 Tan-Chr2:14677850 9.90E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28741 PF00010 HLH 8.90E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1396 - - - 0.0