Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1423 ATGGCGCGCCGGAATCCGCTCCGGCTGTGTTTTTCATCTGCGGTTCTTCTTGTTTTCATGTTATTCCCTGCCGGAGGAGAGGCGGACCTTGCATCGGACAAGGTGGTGCTGTTGGCGCTTCAGAAGGCGATGGGCGCTCGGAGCCGGACTCGCCACTGGAACCTCTCCGATGAGACTCCGTGTTTCTGGCTTGGCGTCACTTGCGACGGCGGGAGGGTTACTAAACTGCGGCTTCCCGGCGTCGGACTCGTCGGTCAACTTCCTCTAGGGCTTGGAAATTTGACTCAACTGGAAACCCTATCTCTTCGCTCTAACATGCTTTCCGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAACGGAACTCGTTTTCCAGCGAGATTCCTCCGGTTCTTTTCAGTATGCAGAGTTTAGTTCGCCTGAATTTGGCGTATAACCAGTTCGTCGGTCCGATTTCATCTGAATTCAACAATCTCACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAACTCGCTGGATTCATTCCTGACTTGAACATTCCCTCGTTCAAAACTCTCAACGTTTCTTTCAATCGTCTCAATGGCTCAATCCCAGCGCGGTTTTCCGATCAGCCAGCCAGTGCCTTCGACGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGTGATGGCGAGGAGAGGAAATTATCCCCCGGTGCGATTGCTGGAATCGTAATCGGAAGTTCAATTGCATTCTTGATCATCGTTCTGATTTTGATCTTTCTGTGCCGAAAGATGATTAGGATTAACGGGCCCAGCGATGCTCAGACGACGACAACTTCGTCGGTCGAGAATGGAGGTGGAGGAAATGGAGGAATTGGGAATCAGAGGAGGTTGGTGTTCTGTGGGAAAGGAGAAAGTGTGTTTGATTTGGAGGAACTGTTGAAGGCTTCTGCAGAGGTGTTGGGGAAGGGAACTTTTGGATCAACTTACAAGGCAGCTTTGGATATGGGGATGGATGTGGTGGTTAAGAGATTGAGAGATGTCAAAGTTTCAGAGGAAGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCCATTAATGCTTACTATTATGGCAGAGATGAGAAGCTTCTGCTTTGTGATTATGTTCCCATGGGAAGCTTATCTGTGCATTTACACGGTAACAAAGATTCTGGTAGGACTCCATTGAAATGGGAAGCAAGGGCTGGCATTATGCTCTCAGCCGCTCGTGGGATTTCGTATCTACATTCTCGACGACCTCCGACCTCCCATGGGAATATAAAGCCTTCAAACATTCTCCTCAACAGATCCAACACAGCTTGTGTCTCTGACTTTGGCCTAATTCAGATTGCTAGCCCTACTTCCACTCCAAACCATGTTGCAGCCTACCGCGCCCCTGAAGTCACCGATCCTCGAAAGGTATCCCTGAAAGCAGATGTTTATAGTTTTGGTGTGGTAATTTTAGAGCTTCTAACAGGGAAGGCTCCAAACTCGCCAATGCTTAACGACGATGGCGTAGACCTCCCGCGATGGGTGAACTCGAAGGTCGAAGAGAAGAAGACTGCTGAAGTGTTTGATAAGGAGCTGATGGAAAACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCATGTTGTGCACAGCTCCACACCCGGATAGTCGCCCTTCGATGGGGAAGGTGACGAGTCGAATCGACGAAATATATCATTCGATCTTACTGAAAGAACAAGAGATGAGTAACGATAAGTTTTATGATGCGGACAGTGCTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1878 48.46 MARRNPLRLCFSSAVLLVFMLFPAGGEADLASDKVVLLALQKAMGARSRTRHWNLSDETPCFWLGVTCDGGRVTKLRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSSEIPPVLFSMQSLVRLNLAYNQFVGPISSEFNNLTNLEVLNLEGNQLAGFIPDLNIPSFKTLNVSFNRLNGSIPARFSDQPASAFDGNSLCGKPLSPCDGEERKLSPGAIAGIVIGSSIAFLIIVLILIFLCRKMIRINGPSDAQTTTTSSVENGGGGNGGIGNQRRLVFCGKGESVFDLEELLKASAEVLGKGTFGSTYKAALDMGMDVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPINAYYYGRDEKLLLCDYVPMGSLSVHLHGNKDSGRTPLKWEARAGIMLSAARGISYLHSRRPPTSHGNIKPSNILLNRSNTACVSDFGLIQIASPTSTPNHVAAYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSPMLNDDGVDLPRWVNSKVEEKKTAEVFDKELMENKNGLDEMVQLLHLAMLCTAPHPDSRPSMGKVTSRIDEIYHSILLKEQEMSNDKFYDADSAVSQQFYSADSIMVPPSI 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12810938 12813909 - Tan0001544.1 Tan11g1423 768360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1423 625 PANTHER OS05G0588300 PROTEIN 15 593 IPR050994 -
Tan11g1423 625 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515(InterPro)
Tan11g1423 625 Pfam Leucine Rich Repeat 168 185 IPR001611 GO:0005515(InterPro)
Tan11g1423 625 Gene3D Ribonuclease Inhibitor 142 230 IPR032675 -
Tan11g1423 625 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Tan11g1423 625 SMART LRR_typ_2 166 189 IPR003591 -
Tan11g1423 625 SMART LRR_typ_2 94 117 IPR003591 -
Tan11g1423 625 SMART LRR_typ_2 118 142 IPR003591 -
Tan11g1423 625 Pfam Leucine rich repeat 92 130 IPR001611 GO:0005515(InterPro)
Tan11g1423 625 FunFam Probable inactive receptor kinase RLK902 30 187 - -
Tan11g1423 625 Gene3D Transferase(Phosphotransferase) domain 1 392 598 - -
Tan11g1423 625 Gene3D Phosphorylase Kinase; domain 1 296 391 - -
Tan11g1423 625 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 392 597 - -
Tan11g1423 625 Pfam Protein tyrosine and serine/threonine kinase 321 582 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan11g1423 625 SUPERFAMILY Protein kinase-like (PK-like) 321 581 IPR011009 -
Tan11g1423 625 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524(InterPro)
Tan11g1423 625 SUPERFAMILY L domain-like 49 211 - -
Tan11g1423 625 FunFam pollen receptor-like kinase 1 289 391 - -
Tan11g1423 625 ProSiteProfiles Protein kinase domain profile. 317 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1423 625 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2172 Tan-Chr5:72517349 Tan11g1423 Tan-Chr11:12810938 8.70E-135 dispersed
Tan09g1335 Tan-Chr9:65636570 Tan11g1423 Tan-Chr11:12810938 5.00E-90 dispersed
Tan09g1789 Tan-Chr9:69389262 Tan11g1423 Tan-Chr11:12810938 6.30E-61 dispersed
Tan11g1423 Tan-Chr11:12810938 Tan11g1832 Tan-Chr11:21409204 4.10E-49 dispersed
Tan11g1423 Tan-Chr11:12810938 Tan08g0198 Tan-Chr8:1771376 2.00E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68214 PF07714 PK_Tyr_Ser-Thr 2.50E-33 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1423 - - - 0.0