Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1429 ATGGTTCTGTCCAAGACTGCTTCTCAGACAGATGTCTCTGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATCCCTAAGGAAGCTGCGTTCCAGATCATCAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATTTGGCCTCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAATCGATGCGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGCGATGCTGAGACGGCGGTGGGAGTTGGAACAGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAGGTGGCAGAACAGAATGAAGGCTGAAGGCAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAGCTGAAAGAGGTGAAATTGAGGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCTACTCTCAATGGAGAATTTGAAGATGTAAAGCTCTTAAACGATCTCTTAATCGAGAAGAACAAGGAAACCGGATGGGACACTCCTATTCATGTGGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCAGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTGAAGAGTATTAATGTGAGTGGGCATAAATATGGGCTTGTTTATGCTGGAATTGGTTGGGTCATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATTTTCCACATCAACTATCTTGGGGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGTTCTAGCCAAATCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTCCTGAAGGAAGGACTGGAAAAAACAGGACGGTTCAACATTGTGTCAAAAGACAATGGAGTTCCATTAGTGGCCTTCTCCTTGAAAGACAACACTCGCCACACAGAGTTTGAAGTCTCAGAAATGCTGAGGAGATTCGGCTGGATCGTCCCGGCTTACACCATGCCTCCGGACGCACAGCACATAACAGTTCTAAGAGTTGTGATCCGAGAAGATTTCTCCCGCACGCTTGCAGAGCGTCTGGTGGCAGACATCGAAAAGGTGATGCACGAGCTCGACATCCTCCCGTCGAAGGCCGATATCAAGACGCTGGTGGCTGGAGAAGAGACACAGCGTAACAACGTCGTCGTGGCGAAGAAGAGCGCACTCGAGACGCAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGGAGAAGAAGAAGACTAATGGAGTTTGTTAG 1500 47.8 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDAETAVGVGTVGSSEAIMLAGLAFKRRWQNRMKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVMHELDILPSKADIKTLVAGEETQRNNVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12840490 12851094 - Tan0017568.1 Tan11g1429 768366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1429 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Tan11g1429 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Tan11g1429 499 CDD DOPA_deC_like 59 439 - -
Tan11g1429 499 FunFam Glutamate decarboxylase 66 360 - -
Tan11g1429 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Tan11g1429 499 FunFam Glutamate decarboxylase 361 448 - -
Tan11g1429 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Tan11g1429 499 Gene3D - 1 65 - -
Tan11g1429 499 FunFam Glutamate decarboxylase 1 65 - -
Tan11g1429 499 Gene3D - 66 360 IPR015421 -
Tan11g1429 499 Gene3D - 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3376 Tan-Chr5:85572949 Tan11g1429 Tan-Chr11:12840490 2.40E-222 dispersed
Tan11g1429 Tan-Chr11:12840490 Tan11g1696 Tan-Chr11:16492666 4.10E-246 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1429 K01580 - csv:101216119 980.704