Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1444 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACAGTTGCAGCAGCTCTCACTTCTCCAGTAGCCTCCCATTTCTCTTCTTCCACCTCCTCACCGTCGCCCGATTCCGCGCCGTCGCTCTCCGAGTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCGATCCTCGCGATGCGGTCGGCGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGGTATGGCATGGCGACGGTGGGGCTCAGCGAGGTGCTCTTCGAACGCGGACAGATCTGCGGCGCTTGCTTTCAGCTCCGGTGCGTGGAGGACCTCCGGTGGTGTATTCCTGGCACCTCTATCATAGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATATGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAGGGGGGTATTCGATACATGATTTCTGGATACGGCATCTACCTCTCAGTGTTGATAAGTAACGTAGCAGGCGCCGGAGATGTGAGTGCTGTAAAGATCAAGGGCTCGAGAACCGGTTGGCTTCCGATGGGTCGAAATTGGGGGCAAAACTGGCACATTAACGCAGATTTGAACAATCAGGCCCTTTCCTTTGAAGTCACTAGCAGTGATGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAAGATTGGAACTTTGGACAGACTTTTGAAGGCAAGCAATTTGAATCTTGA 807 52.17 MSPSLPLHFLFTVAAALTSPVASHFSSSTSSPSPDSAPSLSEWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEVLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYMISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12979396 12984341 + Tan0018366.1 Tan11g1444 768381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1444 268 PANTHER EXPANSIN-A15 20 266 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 Pfam Expansin C-terminal domain 176 252 IPR007117 -
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Tan11g1444 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Tan11g1444 268 CDD DPBB_EXPA_N 42 169 - -
Tan11g1444 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Tan11g1444 268 Gene3D - 27 170 IPR036908 -
Tan11g1444 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
Tan11g1444 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Tan11g1444 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Tan11g1444 268 Pfam Lytic transglycolase 80 164 IPR009009 -
Tan11g1444 268 SMART dpbb_1 78 164 IPR007112 -
Tan11g1444 268 Gene3D - 179 266 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0699 Tan-Chr11:6079714 Tan11g1444 Tan-Chr11:12979396 1.10E-69 dispersed
Tan11g1444 Tan-Chr11:12979396 Tan01g2437 Tan-Chr1:30691827 2.70E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1444 - - - 0.0