Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1469 ATGGTGGCACATGCCTGCTGTCAAATCAATGGGAGAATGGACGGTGAGGATGAAAAGACTCATAGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTTCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAACAAAGAAGTTGATGGGCATATACCAAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGACGTGGAAACGGATGAAGTATATGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCGCTGGATTTTTCACAACAGCCACCGGCACAAGAGCTGATTGCAAGGGACCTTCATGACGTTGAATGGAAGTTTAGGCATATTTTTCGCGGTTGGGAGGATGTCTTATTTTCCCTCCTTGTACTCTTTCGTTAA 678 47.35 MVAHACCQINGRMDGEDEKTHRGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGWEDVLFSLLVLFR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13381373 13399268 + Tan0014131.1 Tan11g1469 768406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1469 225 Pfam B3 DNA binding domain 154 212 IPR003340 GO:0003677(InterPro)
Tan11g1469 225 CDD B3_DNA 153 215 IPR003340 GO:0003677(InterPro)
Tan11g1469 225 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 212 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g1469 225 SUPERFAMILY DNA-binding pseudobarrel domain 138 213 IPR015300 -
Tan11g1469 225 Gene3D - 152 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1469 Tan-Chr11:13381373 Tan11g2197 Tan-Chr11:59274760 1.80E-47 dispersed
Tan11g1469 Tan-Chr11:13381373 Tan03g2736 Tan-Chr3:80297074 1.20E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1469 K14486 - csv:101208098 390.578