Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1470 ATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTTTTTTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAATCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCTTCTCTGTTTCCACTTAGATTAAAACGTCCATGGCATCCTGGAGTCTCTTCTGCTCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGGAGTAGGGGACCAGGCTCTACACTCACTGAATTTGCAATCCGTGGGTTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAATCAACAGTATCAAGCCATGCTGGCTGCTGGAATGCCGAACCTTGGAGGTGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAGCCTTTCCAATATATTCAGCAGGCAGGCTTCCATAATTCTCTGTTGCAGCTGCAACAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCCCAGAACATCCTGCAGGGGCCAAACCAAGTTATGGCAGAAAATCTACCCCAACACATTCTCCAGCAAACCCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGCGCATTCAAATGTGCCATCGCCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCGGAATCCATTACCTCTAGAAGAAACATACTTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATATTTATAGAAGTGGGCAGTCAATCCTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATTCTCACCCAACCTCAATGTCCTTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTTGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCGATTGGTCCTGATTCATCCTCAATGCCATTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCAGGGCAAGTTGATCCATCGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCTGGTATATCAAGATACTTTCTCCCCAGGATTTTCAGAAACTAGGGGAACAGGCAATCGAATCCTTCAACCCTATTGTCGGTCAGCGACTAACCAGTGGTGGCAATGAAGCCGAAAATGTTTCGGGGCTACCGTCTGTTGGTTCGCTAGAATATTGA 1848 45.35 MPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSAHDNRDDASNGLMWLRGGGVGDQALHSLNLQSVGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQLQQQQQQQQQQLVQQSMPQNILQGPNQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTLQVQSNQFHQGAHSNVPSPTFPRTDLMDSNTNYSESITSRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSQVDSHPTSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHSSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGEQAIESFNPIVGQRLTSGGNEAENVSGLPSVGSLEY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13400344 13411544 + Tan0015544.1 Tan11g1470 768407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1470 615 FunFam Auxin response factor 485 579 - -
Tan11g1470 615 SUPERFAMILY CAD & PB1 domains 482 564 - -
Tan11g1470 615 MobiDBLite consensus disorder prediction 377 403 - -
Tan11g1470 615 Pfam AUX/IAA family 486 576 IPR033389 -
Tan11g1470 615 ProSiteProfiles PB1 domain profile. 490 575 IPR053793 -
Tan11g1470 615 FunFam Auxin response factor 57 129 - -
Tan11g1470 615 Pfam Auxin response factor 19 101 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g1470 615 Gene3D - 57 129 - -
Tan11g1470 615 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 581 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g1470 615 Gene3D - 486 579 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1470 Tan-Chr11:13400344 Tan11g2197 Tan-Chr11:59274760 5.80E-32 dispersed
Tan11g1470 Tan-Chr11:13400344 Tan03g2736 Tan-Chr3:80297074 1.90E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1470 K14486 - csv:101208098 1147.5