Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan11g1474 | ATGATGATGAACCCCATCCCGGTTCACCACGTTAACCGGTTCGCCGCCTCCGCTAATTCTTCGCCGGATCTCGCCGCCGCCGTTCCCGGCTTCGGAGTTCATCGCAAGAAGAGGATGGCTAGACAGCGCCGCTCTTCTTCTAATCTTCATTTCTCCTTTCCTTCTTCTTCTTCTTCTTCAAATTCTTCTTCCTCCGCCCACCTCCTCCCTTCCCCACGGGTAATTGATCTAAGGAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAAAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAGCTTTAGAGTCTAAAGAAGGGATCATCATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGGGACTTTGTCAATGCCCATGGCTTACAACTAGGAGATTTCATCATGGTTTACCAAGATTTTGAAGATCACAATTATGTCATTCAAGCAAAAAAGGCTTCCGATCAAGAACTATATTCCGACATAGCAAGCAACGTCGTGATCAACGACGACATTGCCTTTCAAGACTACGATGCTAGCAAAGCTGCCAGCTCCATATACGTGCCTAGTCCAACCATGGACGATCCCGTGTCGTCGTTCATCTACGACACCAGTTCTGCCTTCGACAACGATTCACCCTTCGACTTTATGAGTGGCTCAATGACCAACTACTCGAGAATGGGAGCTCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCCCTCGACGACTTCTACTAA | 834 | 46.76 | MMMNPIPVHHVNRFAASANSSPDLAAAVPGFGVHRKKRMARQRRSSSNLHFSFPSSSSSSNSSSSAHLLPSPRVIDLRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDFEDHNYVIQAKKASDQELYSDIASNVVINDDIAFQDYDASKAASSIYVPSPTMDDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSRMGALEGFGSVENLSLDDFY | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 13450125 | 13453874 | + | Tan0008299.1 | Tan11g1474 | 768411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan11g1474 | 277 | ProSiteProfiles | B3 DNA-binding domain profile. | 84 | 186 | IPR003340 | GO:0003677(InterPro) | |
| Tan11g1474 | 277 | CDD | B3_DNA | 82 | 184 | IPR003340 | GO:0003677(InterPro) | |
| Tan11g1474 | 277 | SMART | B3_2 | 84 | 186 | IPR003340 | GO:0003677(InterPro) | |
| Tan11g1474 | 277 | Pfam | B3 DNA binding domain | 84 | 183 | IPR003340 | GO:0003677(InterPro) | |
| Tan11g1474 | 277 | SUPERFAMILY | DNA-binding pseudobarrel domain | 82 | 180 | IPR015300 | - | |
| Tan11g1474 | 277 | MobiDBLite | consensus disorder prediction | 43 | 68 | - | - | |
| Tan11g1474 | 277 | FunFam | B3 domain-containing transcription factor FUS3 | 80 | 194 | - | - | |
| Tan11g1474 | 277 | Gene3D | - | 80 | 197 | IPR015300 | - | |
| Tan11g1474 | 277 | MobiDBLite | consensus disorder prediction | 45 | 68 | - | - | |
| Tan11g1474 | 277 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 35 | 191 | IPR044800 | GO:0003700(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan06g1324 | Tan-Chr6:16055370 | Tan11g1474 | Tan-Chr11:13450125 | 1.40E-32 | dispersed | |
| Tan08g2440 | Tan-Chr8:75585057 | Tan11g1474 | Tan-Chr11:13450125 | 1.30E-15 | dispersed | |
| Tan08g2441 | Tan-Chr8:75585057 | Tan11g1474 | Tan-Chr11:13450125 | 1.80E-15 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28748 | PF02362 | B3 | 4.70E-18 | CL0405 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan11g1474 | K09287 | - | csv:101222512 | 399.053 |