Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1478 ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCAAGGCTCCGCTTCTTCCCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCTTCTTTACAGGTTCAATATTCCTAATCTCCGCGTTGGAACGCTGGATTCGCTCCTTTCCCTCAGCGATGATCTCCTCAAGTCGAACAGTTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAAAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTCGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGGAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTCGTGGTTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATTCGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAACCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGATTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAGGAGAGTAGAAAACAGGAGTTAGAAAAATTGGTGCAGGACCAGGATGGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCCGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTCTGGCACCATCTTCTAAAAGTGAGAAGAAAGTTAGGTCAATCCTGGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGCTGGTCTCGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGCCTAA 1131 45.0 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTLLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVVVPKYSQKEWLSSYETLTSYVVPRSSKKLFEDNEYALYTVTLFNRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQDGLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSSKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMAGLGGDSDAHPYVSFTINLA 376
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 13472550 13477811 + Tan0017980.1 Tan11g1478 768415

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1478 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Tan11g1478 376 FunFam V-type proton ATPase subunit C 163 251 - -
Tan11g1478 376 Gene3D - 41 312 - -
Tan11g1478 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 Gene3D - 163 251 - -
Tan11g1478 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1478 K02148 - - csv:101221574 708.753
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan06g0024 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1177.2
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan07g0064 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.9 6.0e-78 288.1
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 7.8e-199 690.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36