Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1478 ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCAAGGCTCCGCTTCTTCCCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCTTCTTTACAGGTTCAATATTCCTAATCTCCGCGTTGGAACGCTGGATTCGCTCCTTTCCCTCAGCGATGATCTCCTCAAGTCGAACAGTTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAAAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTCGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGGAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTCGTGGTTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATTCGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAACCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGATTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAGGAGAGTAGAAAACAGGAGTTAGAAAAATTGGTGCAGGACCAGGATGGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCCGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTCTGGCACCATCTTCTAAAAGTGAGAAGAAAGTTAGGTCAATCCTGGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGCTGGTCTCGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGCCTAA 1131 45.0 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTLLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVVVPKYSQKEWLSSYETLTSYVVPRSSKKLFEDNEYALYTVTLFNRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQDGLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSSKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMAGLGGDSDAHPYVSFTINLA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13472550 13477811 + Tan0017980.1 Tan11g1478 768415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1478 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Tan11g1478 376 FunFam V-type proton ATPase subunit C 163 251 - -
Tan11g1478 376 Gene3D - 41 312 - -
Tan11g1478 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 Gene3D - 163 251 - -
Tan11g1478 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Tan11g1478 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1478 K02148 - csv:101221574 708.753