Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1492 ATGTCTGGTTCTGATGGCGTCAACAACACCAACAACAATGGCGCCATAATCGACCTTCCTCAACAGAGACATAACCAACAACAGAGCAATCAGACTTCCAACAATGGCGCTTTGACTGTCAAAAAACCCCCCTCTAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCATTTGTGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCCTCGATCATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCTACCATCTCCGCCTCTCTTCGCGGTGCTGCCGCTGCTGTTTCCTCTTCTTCTTCCTCTCTTTCCGCTTCTTTCGACCATAAACCCCTTCTGGCTCCGGCTCCCTTCATTCTCGGCAAGCGCGTCAGAACCGACGATGATGGAGGTAATAAAGACGACGGTGGCGGTGGCGGTGGTGGCATTTCGGTCGGCCACTCTGTCGGTTCGATTATGGGTCCGGCTGCGGGTGGCTACTGGGCTATTCCTGCCAGGCCGGATTTCGGGCAAGTGTGGAGCTTTGCCGCCGCCGCGGCAGCGGCGGCTCCGGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTCACTGTTCGTTCAGCAGCAATCGATCGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCGAGTGGACCGGGAAGTTCCGGCCGGAGAGACAACGACCACCGTTGA 813 58.43 MSGSDGVNNTNNNGAIIDLPQQRHNQQQSNQTSNNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAAAAVSSSSSSLSASFDHKPLLAPAPFILGKRVRTDDDGGNKDDGGGGGGGISVGHSVGSIMGPAAGGYWAIPARPDFGQVWSFAAAAAAAAPEMVIQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSSGPGSSGRRDNDHR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13710718 13712798 + Tan0005888.1 Tan11g1492 768429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1492 270 Pfam TCP family transcription factor 45 136 IPR017887 -
Tan11g1492 270 MobiDBLite consensus disorder prediction 151 170 - -
Tan11g1492 270 MobiDBLite consensus disorder prediction 1 55 - -
Tan11g1492 270 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Tan11g1492 270 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 157 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Tan11g1492 270 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1492 K16221 - - csv:101214586 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2130 Tan-Chr9:71602131 Tan11g1492 Tan-Chr11:13710718 5.00E-29 dispersed
Tan11g1492 Tan-Chr11:13710718 Tan04g0422 Tan-Chr4:3533260 1.20E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28751 PF03634 TCP 2.00E-32 No_clan Tan TF