Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1538 ATGTCTTCTTTTCTTTCATGGTTCTTGTTCTTCTCCCTTTCGTTTACATTTTCCGGTACGGGCGGCTCGGTTCCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCGCTTGACGGCTCTGATGTTCTTCGTGGCTGGAACTTTTCGATTTCTCACTGTGAGTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAATATTAGTGGAAGTGGTGGTGTAGTGGCGGCGAGTTCATTTCTGGCTGGGACTTTGAATCCGGCGATTGGAAATCTTGCTGAACTTCGTGTTTTGTCGCTTCCGAATAATCTGATCTACGGGGAGATTCCCGGGAGTTTTGGTAAGCTTCAGTCGTTAGAGGTTCTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAAACAGATAAGTTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATACCGAGTAAATTGATCGGTTCGGCGAAATTAGAAGCAATTGATTTGTCGTACAACCAATTATCTGGTAGGATTCAAGTTTCTGATAGTAGATGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACCGATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTGAAGACTCTGTTTCTCGATGGTAATATATTAGAGGGTCAAATTCCGGCTGAGATCGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCCAGGAATAGCCTTACTAATTCGATTCCAAAAGAGCTCGGTAATTGCCGGAAGTTGTCACAGATCATGTTGACGAACTTGAACGATATCAATCCCGACGACGATAGCTTAAGGGGGGAATTCAACGCTTTCGATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTTTGGGCACCGAGAGGGAATTTTAATGGCAAATTTCCGAATAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAACTTAGGGCAAAATTACATCACTGGTACCATACCCGAATCGATTGGGAAATGTGTGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTACAAGGTAACCTCCCTACGCAGCTTCGAGTTTCATGCATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGCGTGCTTCCGAGATTTGAGAAAGATAGTTTTTGCAAGAACAAAATCCCACTTGAACCAGTTCCCAATTTCTTAGATGAGGAAGATGATTGGAATTCTTTCTTCAATTTTCCTGTTTGGGATTTCCTGAGATTGAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCATTCAGAGTGGGAGAAGAGCTTTTGGCTAATGGCCACAAGTTCTCATACAAACTGTTACTTAATAGCAACCAGTTCAATGGATCACTTCCTGTTGATCTGGTCTCGAACTGTAACGATATGAAGAGTGTTTTGGTTCACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATGGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCAGGAATTGGTGACTTGCAGATGCTTCTTCGTCTCGACTTGAGAGGGAATAGGTTGTCTGGAGTTTTACCAGATCAGTTGGGGAAGTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTCACCGGAGAGATTCCATCTCGACTCAGTCAATTGACTTCTCTCACGAGTTTAGATCTTTCTCAAAACGAATTTACAGGACCTATTCCTGAAAGCTTGTCATATGCTTCAAGACTAGAGATTCTGTTGCTTGATCATAACAGGTTAACTGGGGAAATGCCAGCATCTTTCTCTGCCCTTTCTCATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTACAGTGGGAATAAGTTTCTGTATCCATGCCCGGATTCATACTCCGAGCCCCCGGCTGGACTTCCGGTTCCTCTTGACGTTGAGAAGTGGAAGAGACGAAGAAAGTTTGTTTCTATGATAATTGCTGTGGCTGCTTCCTCAACTCTAATTTGCATACTCATAATGATAGCTGTTATCATCATTGTGAAGAAAAAGCTTGGTAGACAAAATAGGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAATGTGGTCCGAGCTACCGAGAATTTCAGCCTTCGCTACCTAATCGGTACTGGTGGCTTTGGGTCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCCGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATTCAACAATTCGATGCAGAGATTCGAACATTGGGAAGAATACGACACAAAAACCTCGTAACTCTTCTCGGGTACTATGTTGGAGAGGCTGAGATGTTCTTAGTTTACAACTATCTTTCCGGTGGGAACCTCGAGACCTTCATTCATGAAAAATCTTGCAAACACGTAAAGCACTCAGTGATCCACAAGATCGCTTTGGACATAGCGCGGGCTCTTGCATACCTTCATTACTCCTGCGCTCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTACTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCCAGGCTTCTTGAGGTCTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACCACTTGTAGGGTCTCGGACAAGGCAGATGTTTATAGCTTTGGAGTTGTGCTCTTAGAGTTGCTTTCGGGAAAAAGGTCGCTTGATCGATCCTTTTCCGACTTTGGGAACGGGTTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCAAAGGAACACTTACTTGGAATGTTAAAGCTCGCGTCTAATTGCACAGTTGAAATCCTTGCTCTTCGACCATCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 43.07 MSSFLSWFLFFSLSFTFSGTGGSVPDDAMSLLMFKGSISLDGSDVLRGWNFSISHCEWFGVTCDGVTGRVVALNISGSGGVVAASSFLAGTLNPAIGNLAELRVLSLPNNLIYGEIPGSFGKLQSLEVLELQGNNFSGEIPKQISSLRSLRLLNLSDNSFSGSIPSKLIGSAKLEAIDLSYNQLSGRIQVSDSRCGVLNHLRLSHNFLTDNIPAEIGQCWKLKTLFLDGNILEGQIPAEIGQISELRILDVSRNSLTNSIPKELGNCRKLSQIMLTNLNDINPDDDSLRGEFNAFDGGIPSELLLLPSLQVFWAPRGNFNGKFPNNWSSSCSLRVLNLGQNYITGTIPESIGKCVNLTYLDLSSNKLQGNLPTQLRVSCMAYFNVSQNKISGVLPRFEKDSFCKNKIPLEPVPNFLDEEDDWNSFFNFPVWDFLRLNDNLIIAHDFSWNRFSGSLTSFRVGEELLANGHKFSYKLLLNSNQFNGSLPVDLVSNCNDMKSVLVHLSSNLVSGEISDAFFLHCRQMMEFEAASNELDNSIGPGIGDLQMLLRLDLRGNRLSGVLPDQLGKLQSLKWMLLGGNNFTGEIPSRLSQLTSLTSLDLSQNEFTGPIPESLSYASRLEILLLDHNRLTGEMPASFSALSHLTKLDVSFNNLSGHIPHLQHMIDCIYYSGNKFLYPCPDSYSEPPAGLPVPLDVEKWKRRRKFVSMIIAVAASSTLICILIMIAVIIIVKKKLGRQNRLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCAPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14172463 14176482 + Tan0015532.1 Tan11g1538 768475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1538 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Tan11g1538 1043 Gene3D Ribonuclease Inhibitor 193 288 IPR032675 -
Tan11g1538 1043 Pfam Leucine Rich repeats (2 copies) 332 367 IPR025875 -
Tan11g1538 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1538 1043 Pfam Leucine rich repeat 550 605 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Tan11g1538 1043 SMART LRR_typ_2 545 568 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 99 122 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 123 146 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 593 617 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 641 663 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 147 171 IPR003591 -
Tan11g1538 1043 SMART LRR_typ_2 243 267 IPR003591 -
Tan11g1538 1043 Pfam Leucine Rich Repeat 619 641 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 Pfam Leucine Rich Repeat 149 167 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
Tan11g1538 1043 SUPERFAMILY L domain-like 24 393 - -
Tan11g1538 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1538 1043 CDD STKc_IRAK 774 1043 - -
Tan11g1538 1043 SUPERFAMILY L domain-like 295 678 - -
Tan11g1538 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tan11g1538 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Tan11g1538 1043 Gene3D Phosphorylase Kinase; domain 1 729 844 - -
Tan11g1538 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 282 - -
Tan11g1538 1043 Pfam Protein kinase domain 773 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan11g1538 1043 PRINTS Leucine-rich repeat signature 593 606 - -
Tan11g1538 1043 PRINTS Leucine-rich repeat signature 357 370 - -
Tan11g1538 1043 SUPERFAMILY Protein kinase-like (PK-like) 745 1040 IPR011009 -
Tan11g1538 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 445 684 - -
Tan11g1538 1043 Gene3D Ribonuclease Inhibitor 26 192 IPR032675 -
Tan11g1538 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan11g1538 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Tan11g1538 1043 Gene3D Ribonuclease Inhibitor 289 417 IPR032675 -
Tan11g1538 1043 Gene3D Ribonuclease Inhibitor 420 688 IPR032675 -
Tan11g1538 1043 Pfam Leucine Rich repeat 642 655 IPR001611 GO:0005515(InterPro)
Tan11g1538 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 286 371 - -
Tan11g1538 1043 PANTHER RECEPTOR-LIKE PROTEIN 55 318 1040 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1538 Tan-Chr11:14172463 Tan04g0926 Tan-Chr4:8051596 1.50E-59 dispersed
Tan11g1538 Tan-Chr11:14172463 Tan04g1843 Tan-Chr4:57366087 9.20E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68218 PF00069 Pkinase 2.60E-44 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1538 - - - 0.0