Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1555 | ATGTCAACCCAGCAGCAGAATTCTGATTCAAATGCCGTTTCAGGCGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAACAATGGAACTGGAAGAAGGAACAACAGCTCTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGTCAGTCCGGTAATAAGTTTTGTGCAGATTGTGGCTCACCGGATCCGAAATGGGTATCGTTGAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATACTTTGATAAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATAGACGTGAACAGGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGAATTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGCCAATAGTCATAGTTCTAGTGATAACAACTCATTTAGTAAAAGGAGTTCACCATGCTCTCAAAGTAACTCTTCAAGCAAGAATGGTACCCAGGACAAAAGGCCCTATGAGAAACAAGCTACTAGGCATCGCATTGGGAATGCATTTCGTAACAGCCGAGCAAGAAGAGATAGCGACCGCAAGAGTTTTGACAGGAGCAACCCTTCAGTCTCGAGACAAGCATCGGCAGGTATGGTTGAATTTGTCGGGTTGATTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTGTTCGAGACGTAGTAACCAGCGATCCCTATGTCATTCTCGTGTTAGGTCACCAATCGGTGAAGACTCGCGTCATTAAGAACAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCGATTCCCGAGCATATCCCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGCGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCCACGAAGGCCTACGAGAAGTCGACAATTGATGAATCAATGCAGCTAGGAAAATGGGTGGCTAGTAATGACAATACCTTGGTAAAAGATGGAGTCATTAACCTTGTAGATGGAAAGGTTAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATTCTTGAGATTGAGCTAGAATGCATTCCTCTAACACAATAG | 1239 | 43.91 | MSTQQQNSDSNAVSGACLFDLLFPDSEMQGWDWSRMPSDSETQQWNWKKEQQLSGPQKRLEDLLRQSGNKFCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLISMGGNTDVNKKYEAGIIDVNRKPKPDSCIEERFEFIRRKYELLQFYNANSHSSSDNNSFSKRSSPCSQSNSSSKNGTQDKRPYEKQATRHRIGNAFRNSRARRDSDRKSFDRSNPSVSRQASAGMVEFVGLIKVNVVRGTNLAVRDVVTSDPYVILVLGHQSVKTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGVINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14351095 | 14363617 | - | Tan0009524.1 | Tan11g1555 | 768492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1555 | 412 | MobiDBLite | consensus disorder prediction | 176 | 244 | - | - | |
Tan11g1555 | 412 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 254 | 412 | - | - | |
Tan11g1555 | 412 | Gene3D | Arf GTPase activating protein | 37 | 180 | IPR038508 | - | |
Tan11g1555 | 412 | Gene3D | C2 domain | 255 | 409 | IPR035892 | - | |
Tan11g1555 | 412 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 46 | 412 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Tan11g1555 | 412 | Pfam | Putative GTPase activating protein for Arf | 58 | 173 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | PRINTS | HIV Rev interacting protein signature | 69 | 88 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | PRINTS | HIV Rev interacting protein signature | 109 | 130 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | PRINTS | HIV Rev interacting protein signature | 88 | 105 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | SMART | C2_3c | 257 | 352 | IPR000008 | - | |
Tan11g1555 | 412 | FunFam | stromal membrane-associated protein 1 isoform X1 | 41 | 177 | - | - | |
Tan11g1555 | 412 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 347 | IPR035892 | - | |
Tan11g1555 | 412 | CDD | C2_ArfGAP | 255 | 399 | - | - | |
Tan11g1555 | 412 | MobiDBLite | consensus disorder prediction | 204 | 239 | - | - | |
Tan11g1555 | 412 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 57 | 173 | IPR037278 | - | |
Tan11g1555 | 412 | Pfam | C2 domain | 257 | 345 | IPR000008 | - | |
Tan11g1555 | 412 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 57 | 181 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | SMART | arf_gap_3 | 57 | 179 | IPR001164 | GO:0005096(InterPro) | |
Tan11g1555 | 412 | MobiDBLite | consensus disorder prediction | 176 | 203 | - | - | |
Tan11g1555 | 412 | CDD | ArfGap | 60 | 166 | - | - | |
Tan11g1555 | 412 | ProSiteProfiles | C2 domain profile. | 237 | 354 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0537 | Tan-Chr4:4614882 | Tan11g1555 | Tan-Chr11:14351095 | 7.70E-144 | dispersed | |
Tan04g0538 | Tan-Chr4:4614882 | Tan11g1555 | Tan-Chr11:14351095 | 2.80E-82 | dispersed | |
Tan05g2704 | Tan-Chr5:78894888 | Tan11g1555 | Tan-Chr11:14351095 | 3.20E-93 | dispersed | |
Tan10g1458 | Tan-Chr10:20009622 | Tan11g1555 | Tan-Chr11:14351095 | 3.50E-18 | dispersed | |
Tan11g1555 | Tan-Chr11:14351095 | Tan11g1746 | Tan-Chr11:17730282 | 4.40E-28 | dispersed | |
Tan11g1555 | Tan-Chr11:14351095 | Tan03g2784 | Tan-Chr3:80845673 | 4.40E-92 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1555 | K12486 | - | csv:101215531 | 716.072 |