Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1555 ATGTCAACCCAGCAGCAGAATTCTGATTCAAATGCCGTTTCAGGCGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAACAATGGAACTGGAAGAAGGAACAACAGCTCTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGTCAGTCCGGTAATAAGTTTTGTGCAGATTGTGGCTCACCGGATCCGAAATGGGTATCGTTGAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATACTTTGATAAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATAGACGTGAACAGGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGAATTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGCCAATAGTCATAGTTCTAGTGATAACAACTCATTTAGTAAAAGGAGTTCACCATGCTCTCAAAGTAACTCTTCAAGCAAGAATGGTACCCAGGACAAAAGGCCCTATGAGAAACAAGCTACTAGGCATCGCATTGGGAATGCATTTCGTAACAGCCGAGCAAGAAGAGATAGCGACCGCAAGAGTTTTGACAGGAGCAACCCTTCAGTCTCGAGACAAGCATCGGCAGGTATGGTTGAATTTGTCGGGTTGATTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTGTTCGAGACGTAGTAACCAGCGATCCCTATGTCATTCTCGTGTTAGGTCACCAATCGGTGAAGACTCGCGTCATTAAGAACAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCGATTCCCGAGCATATCCCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGCGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCCACGAAGGCCTACGAGAAGTCGACAATTGATGAATCAATGCAGCTAGGAAAATGGGTGGCTAGTAATGACAATACCTTGGTAAAAGATGGAGTCATTAACCTTGTAGATGGAAAGGTTAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATTCTTGAGATTGAGCTAGAATGCATTCCTCTAACACAATAG 1239 43.91 MSTQQQNSDSNAVSGACLFDLLFPDSEMQGWDWSRMPSDSETQQWNWKKEQQLSGPQKRLEDLLRQSGNKFCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLISMGGNTDVNKKYEAGIIDVNRKPKPDSCIEERFEFIRRKYELLQFYNANSHSSSDNNSFSKRSSPCSQSNSSSKNGTQDKRPYEKQATRHRIGNAFRNSRARRDSDRKSFDRSNPSVSRQASAGMVEFVGLIKVNVVRGTNLAVRDVVTSDPYVILVLGHQSVKTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGVINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14351095 14363617 - Tan0009524.1 Tan11g1555 768492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1555 412 MobiDBLite consensus disorder prediction 176 244 - -
Tan11g1555 412 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 254 412 - -
Tan11g1555 412 Gene3D Arf GTPase activating protein 37 180 IPR038508 -
Tan11g1555 412 Gene3D C2 domain 255 409 IPR035892 -
Tan11g1555 412 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 46 412 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Tan11g1555 412 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 SMART C2_3c 257 352 IPR000008 -
Tan11g1555 412 FunFam stromal membrane-associated protein 1 isoform X1 41 177 - -
Tan11g1555 412 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 253 347 IPR035892 -
Tan11g1555 412 CDD C2_ArfGAP 255 399 - -
Tan11g1555 412 MobiDBLite consensus disorder prediction 204 239 - -
Tan11g1555 412 SUPERFAMILY ArfGap/RecO-like zinc finger 57 173 IPR037278 -
Tan11g1555 412 Pfam C2 domain 257 345 IPR000008 -
Tan11g1555 412 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 181 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 SMART arf_gap_3 57 179 IPR001164 GO:0005096(InterPro)
Tan11g1555 412 MobiDBLite consensus disorder prediction 176 203 - -
Tan11g1555 412 CDD ArfGap 60 166 - -
Tan11g1555 412 ProSiteProfiles C2 domain profile. 237 354 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0537 Tan-Chr4:4614882 Tan11g1555 Tan-Chr11:14351095 7.70E-144 dispersed
Tan04g0538 Tan-Chr4:4614882 Tan11g1555 Tan-Chr11:14351095 2.80E-82 dispersed
Tan05g2704 Tan-Chr5:78894888 Tan11g1555 Tan-Chr11:14351095 3.20E-93 dispersed
Tan10g1458 Tan-Chr10:20009622 Tan11g1555 Tan-Chr11:14351095 3.50E-18 dispersed
Tan11g1555 Tan-Chr11:14351095 Tan11g1746 Tan-Chr11:17730282 4.40E-28 dispersed
Tan11g1555 Tan-Chr11:14351095 Tan03g2784 Tan-Chr3:80845673 4.40E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1555 K12486 - csv:101215531 716.072