Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1557 | ATGACATCTGGAAGTCCTTATTTAGATGATATTCGGAGCAAACCAGAGGTTATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACCGTAGATGATCCAGCTCAAAATGAACTTAAACCAACAGCTGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTATCCTCCAATACATCAGTGTTCAAATGGGCATACACTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACATGTAGGCACGAACTTGGCAATATTAGATGTCTTGCGTTGGAGAAGGTGGCCGCATCGCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCCTATAGTTGTCCATATGCTGGATCAGAATGTTTGATTGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTGGACATGCACAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAACCCTCAAGAAGTTGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATATTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATAGCATTCTTGCGGTTCATGGGCGATGATAATGATGCAAAGAACTACAGCTATAGCCTCGAGGTGGGTGGAAATGGGAGGAAAATGGTATGGCAAGGGGTGCCCAGAAGTATCCGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGAAACATGGCTCTATTCTTCTCCGGTGGGGATCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA | 915 | 44.92 | MTSGSPYLDDIRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPTAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECLIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14397708 | 14400743 | - | Tan0001259.1 | Tan11g1557 | 768494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1557 | 304 | SUPERFAMILY | TRAF domain-like | 109 | 301 | - | - | |
Tan11g1557 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 108 | 164 | - | - | |
Tan11g1557 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 92 | IPR001841 | - | |
Tan11g1557 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | IPR008974 | GO:0005515(InterPro) | |
Tan11g1557 | 304 | Pfam | Sina, zinc finger | 105 | 180 | - | - | |
Tan11g1557 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 165 | 297 | - | - | |
Tan11g1557 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 37 | 299 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Tan11g1557 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 164 | IPR013083 | - | |
Tan11g1557 | 304 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Tan11g1557 | 304 | SUPERFAMILY | RING/U-box | 38 | 98 | - | - | |
Tan11g1557 | 304 | CDD | RING-HC_SIAHs | 54 | 92 | - | - | |
Tan11g1557 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 109 | 169 | IPR013010 | GO:0008270(InterPro) | |
Tan11g1557 | 304 | CDD | Sina | 170 | 298 | - | - | |
Tan11g1557 | 304 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 56 | 91 | IPR049548 | - | |
Tan11g1557 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 107 | - | - | |
Tan11g1557 | 304 | Pfam | Sina, TRAF-like domain | 200 | 297 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Tan11g1557 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 108 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan06g1742 | Tan-Chr6:34756841 | Tan11g1557 | Tan-Chr11:14397708 | 3.00E-130 | dispersed | |
Tan07g0668 | Tan-Chr7:10413666 | Tan11g1557 | Tan-Chr11:14397708 | 1.10E-122 | dispersed | |
Tan07g0669 | Tan-Chr7:10413666 | Tan11g1557 | Tan-Chr11:14397708 | 1.10E-122 | dispersed | |
Tan07g1075 | Tan-Chr7:30774004 | Tan11g1557 | Tan-Chr11:14397708 | 9.70E-115 | dispersed | |
Tan07g1076 | Tan-Chr7:30774004 | Tan11g1557 | Tan-Chr11:14397708 | 1.60E-179 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1557 | K04506 | - | csv:101220834 | 625.935 |