Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1557 ATGACATCTGGAAGTCCTTATTTAGATGATATTCGGAGCAAACCAGAGGTTATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACCGTAGATGATCCAGCTCAAAATGAACTTAAACCAACAGCTGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTATCCTCCAATACATCAGTGTTCAAATGGGCATACACTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACATGTAGGCACGAACTTGGCAATATTAGATGTCTTGCGTTGGAGAAGGTGGCCGCATCGCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCCTATAGTTGTCCATATGCTGGATCAGAATGTTTGATTGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTGGACATGCACAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAACCCTCAAGAAGTTGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATATTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATAGCATTCTTGCGGTTCATGGGCGATGATAATGATGCAAAGAACTACAGCTATAGCCTCGAGGTGGGTGGAAATGGGAGGAAAATGGTATGGCAAGGGGTGCCCAGAAGTATCCGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGAAACATGGCTCTATTCTTCTCCGGTGGGGATCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 915 44.92 MTSGSPYLDDIRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPTAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECLIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14397708 14400743 - Tan0001259.1 Tan11g1557 768494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1557 304 SUPERFAMILY TRAF domain-like 109 301 - -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Tan11g1557 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Tan11g1557 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515(InterPro)
Tan11g1557 304 Pfam Sina, zinc finger 105 180 - -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Tan11g1557 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 299 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan11g1557 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Tan11g1557 304 MobiDBLite consensus disorder prediction 1 24 - -
Tan11g1557 304 SUPERFAMILY RING/U-box 38 98 - -
Tan11g1557 304 CDD RING-HC_SIAHs 54 92 - -
Tan11g1557 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270(InterPro)
Tan11g1557 304 CDD Sina 170 298 - -
Tan11g1557 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 56 91 IPR049548 -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 107 - -
Tan11g1557 304 Pfam Sina, TRAF-like domain 200 297 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan11g1557 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 108 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1742 Tan-Chr6:34756841 Tan11g1557 Tan-Chr11:14397708 3.00E-130 dispersed
Tan07g0668 Tan-Chr7:10413666 Tan11g1557 Tan-Chr11:14397708 1.10E-122 dispersed
Tan07g0669 Tan-Chr7:10413666 Tan11g1557 Tan-Chr11:14397708 1.10E-122 dispersed
Tan07g1075 Tan-Chr7:30774004 Tan11g1557 Tan-Chr11:14397708 9.70E-115 dispersed
Tan07g1076 Tan-Chr7:30774004 Tan11g1557 Tan-Chr11:14397708 1.60E-179 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1557 K04506 - csv:101220834 625.935