Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1557 ATGACATCTGGAAGTCCTTATTTAGATGATATTCGGAGCAAACCAGAGGTTATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACCGTAGATGATCCAGCTCAAAATGAACTTAAACCAACAGCTGTTTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTATCCTCCAATACATCAGTGTTCAAATGGGCATACACTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACATGTAGGCACGAACTTGGCAATATTAGATGTCTTGCGTTGGAGAAGGTGGCCGCATCGCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCCTATAGTTGTCCATATGCTGGATCAGAATGTTTGATTGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTGGACATGCACAGTGGAAGCACATTCAACCATCGTTACGTAAAATCAAACCCTCAAGAAGTTGAAAACGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATATTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATAGCATTCTTGCGGTTCATGGGCGATGATAATGATGCAAAGAACTACAGCTATAGCCTCGAGGTGGGTGGAAATGGGAGGAAAATGGTATGGCAAGGGGTGCCCAGAAGTATCCGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGAAACATGGCTCTATTCTTCTCCGGTGGGGATCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 915 44.92 MTSGSPYLDDIRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPTAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECLIVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14397708 14400743 - Tan0001259.1 Tan11g1557 768494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1557 304 SUPERFAMILY TRAF domain-like 109 301 - -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Tan11g1557 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Tan11g1557 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515(InterPro)
Tan11g1557 304 Pfam Sina, zinc finger 105 180 - -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Tan11g1557 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 299 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan11g1557 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Tan11g1557 304 MobiDBLite consensus disorder prediction 1 24 - -
Tan11g1557 304 SUPERFAMILY RING/U-box 38 98 - -
Tan11g1557 304 CDD RING-HC_SIAHs 54 92 - -
Tan11g1557 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270(InterPro)
Tan11g1557 304 CDD Sina 170 298 - -
Tan11g1557 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 56 91 IPR049548 -
Tan11g1557 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 107 - -
Tan11g1557 304 Pfam Sina, TRAF-like domain 200 297 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan11g1557 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 108 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1557 K04506 - - csv:101220834 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1742 Tan-Chr6:34756841 Tan11g1557 Tan-Chr11:14397708 3.00E-130 dispersed
Tan07g0668 Tan-Chr7:10413666 Tan11g1557 Tan-Chr11:14397708 1.10E-122 dispersed
Tan07g0669 Tan-Chr7:10413666 Tan11g1557 Tan-Chr11:14397708 1.10E-122 dispersed
Tan07g1075 Tan-Chr7:30774004 Tan11g1557 Tan-Chr11:14397708 9.70E-115 dispersed
Tan07g1076 Tan-Chr7:30774004 Tan11g1557 Tan-Chr11:14397708 1.60E-179 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan11g0412 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0414 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0413 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan11g0415 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan09g1394 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan09g1395 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan04g2886 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2888 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2887 . 33 166 C3H Transcription Factor Family AT1G50440 86.6 5.6e-68 255.0
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan01g0497 . 1 426 C3H Transcription Factor Family AT3G16090 72.6 2.4e-169 592.8
Tan10g1759 . 31 185 C3H Transcription Factor Family AT1G22510 68.4 1.6e-58 223.4
Tan11g0412 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan11g0414 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan02g1923 . 16 227 C3H Transcription Factor Family AT1G19310 67.3 3.6e-80 295.4
Tan03g1430 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.0e-70 263.1
Tan10g1759 . 35 185 C3H Transcription Factor Family AT1G72175 68.9 1.3e-54 209.9
Tan02g1467 . 9 194 C3H Transcription Factor Family AT1G26800 53.2 1.7e-49 193.4
Tan10g0227 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0229 . 45 233 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0230 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0228 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0231 . 45 228 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0232 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan03g1920 . 9 323 C3H Transcription Factor Family AT2G22120 84.2 1.9e-160 562.8
Tan09g1939 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan09g1940 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan11g1944 . 11 389 C3H Transcription Factor Family AT1G18470 64.3 5.2e-141 498.4
Tan11g1945 . 3 274 C3H Transcription Factor Family AT1G18470 64.4 7.6e-100 361.7
Tan11g1946 . 13 249 C3H Transcription Factor Family AT1G18470 63.8 4.5e-84 309.3
Tan11g1826 . 67 300 C3H Transcription Factor Family AT1G68200 50.8 1.6e-51 200.7
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan01g3212 . 86 331 C3H Transcription Factor Family AT5G55970 66.0 2.5e-95 346.3
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan08g1518 . 1 424 C3H Transcription Factor Family AT3G58030 54.2 5.3e-112 402.1
Tan01g3212 . 90 396 C3H Transcription Factor Family AT4G26580 63.9 2.0e-111 399.8
Tan10g1839 . 22 167 C3H Transcription Factor Family AT4G10150 52.7 6.3e-43 171.8
Tan06g0571 . 6 252 C3H Transcription Factor Family AT3G63530 50.6 9.4e-66 247.7
Tan03g0676 . 1 467 C3H Transcription Factor Family AT5G01960 70.3 7.5e-172 600.9
Tan04g1456 . 1 483 C3H Transcription Factor Family AT5G01960 58.3 9.6e-151 530.8
Tan05g0994 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0995 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0996 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan02g0512 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan02g0513 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan07g0793 . 12 243 C3H Transcription Factor Family AT5G19430 54.4 1.1e-64 244.2
Tan01g1029 . 132 581 C3H Transcription Factor Family AT5G45290 51.2 6.8e-101 365.5
Tan07g0793 . 7 243 C3H Transcription Factor Family AT5G12310 53.0 5.7e-58 221.9
Tan09g1762 . 75 366 C3H Transcription Factor Family AT5G05810 52.4 4.1e-74 276.2
Tan11g0240 . 58 216 C3H Transcription Factor Family AT5G05830 66.0 3.0e-57 219.2
Tan08g2063 . 70 230 C3H Transcription Factor Family AT5G05830 62.3 1.2e-53 207.2
Tan03g0855 . 10 156 C3H Transcription Factor Family AT5G05830 59.2 8.4e-44 174.5
Tan08g2306 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan08g2309 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan11g0412 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0414 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0413 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0415 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0201 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 3.5e-114 408.7
Tan06g0938 . 1 275 C3H Transcription Factor Family AT1G63900 75.0 1.5e-117 419.9
Tan10g0440 . 10 393 C3H Transcription Factor Family AT2G44580 52.3 5.7e-118 421.8
Tan02g1923 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.7e-40 162.9
Tan03g1430 . 15 150 C3H Transcription Factor Family AT1G74990 54.3 3.0e-37 152.1
Tan01g3515 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 1.0e-109 394.0
Tan01g0497 . 119 419 C3H Transcription Factor Family AT1G65040 69.3 1.6e-110 396.7
Tan03g1430 . 17 227 C3H Transcription Factor Family AT2G23780 62.6 2.7e-75 279.3
Tan02g1923 . 6 229 C3H Transcription Factor Family AT2G23780 57.4 4.9e-69 258.5
Tan08g1266 . 1 311 C3H Transcription Factor Family AT3G10810 54.8 1.1e-78 291.6
Tan07g1616 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 1.9e-46 183.0
Tan06g2001 . 1 151 C3H Transcription Factor Family AT1G63840 50.6 2.7e-40 162.5
Tan11g1776 . 8 346 C3H Transcription Factor Family AT1G68070 65.3 1.5e-117 420.2
Tan11g1777 . 8 264 C3H Transcription Factor Family AT1G68070 59.9 6.9e-75 278.5
Tan01g5135 . 4 181 C3H Transcription Factor Family AT1G76410 57.1 7.6e-52 201.1
Tan08g2273 . 9 163 C3H Transcription Factor Family AT1G76410 59.3 8.1e-46 181.0
Tan02g2670 . 1 414 C3H Transcription Factor Family AT1G80400 53.8 9.9e-113 404.4
Tan08g2273 . 1 154 C3H Transcription Factor Family AT2G17450 57.4 3.0e-40 162.5
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan03g1266 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 2.3e-52 203.0
Tan08g1608 . 6 162 C3H Transcription Factor Family AT2G35910 50.9 1.2e-43 174.1
Tan03g0169 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan03g0170 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan01g0097 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0099 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0096 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Tan07g0667 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0668 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0669 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan04g0539 . 31 305 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan04g0542 . 40 314 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan11g1557 . 47 304 C3H Transcription Factor Family AT2G41980 78.7 2.9e-125 445.7
Tan07g1074 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan07g1076 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan06g1742 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 6.1e-123 438.0
Tan01g0098 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan01g0100 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan04g0540 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0541 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0543 . 40 213 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan07g1075 . 48 212 C3H Transcription Factor Family AT2G41980 74.3 1.4e-71 267.3
Tan10g0887 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan10g0888 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan08g1887 . 33 329 C3H Transcription Factor Family AT3G09770 59.2 7.8e-87 318.2
Tan09g2236 . 58 371 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2237 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2238 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan05g2019 . 315 592 C3H Transcription Factor Family AT3G47990 72.4 8.1e-120 427.6
Tan01g5135 . 4 186 C3H Transcription Factor Family AT1G20823 56.8 8.6e-54 207.6
Tan08g2273 . 6 163 C3H Transcription Factor Family AT1G20823 59.4 4.6e-47 185.3
Tan05g1359 . 34 403 C3H Transcription Factor Family AT3G18930 54.4 1.5e-84 310.8
Tan01g2341 . 20 235 C3H Transcription Factor Family AT5G66070 74.1 4.9e-74 275.0
Tan08g1954 . 5 270 C3H Transcription Factor Family AT5G02750 54.5 4.2e-70 262.3
Tan09g1939 . 5 467 C3H Transcription Factor Family AT1G73950 73.7 3.0e-200 695.3
Tan09g1940 . 5 442 C3H Transcription Factor Family AT1G73950 73.7 1.5e-186 649.8
Tan11g1944 . 12 467 C3H Transcription Factor Family AT1G73950 59.3 7.8e-156 547.7
Tan11g1945 . 3 352 C3H Transcription Factor Family AT1G73950 59.5 3.2e-117 419.5
Tan11g1946 . 13 327 C3H Transcription Factor Family AT1G73950 58.2 8.5e-102 368.2
Tan10g1839 . 1 155 C3H Transcription Factor Family AT1G33480 56.1 2.4e-43 173.3
Tan11g1777 . 2 246 C3H Transcription Factor Family AT2G01735 58.6 6.9e-72 268.1
Tan11g1776 . 2 244 C3H Transcription Factor Family AT2G01735 58.7 1.5e-71 266.9
Tan01g1943 . 60 272 C3H Transcription Factor Family AT2G01735 53.5 6.1e-52 201.8
Tan01g1942 . 60 269 C3H Transcription Factor Family AT2G01735 53.8 1.4e-51 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000123 7 13 5 5 9 4 10 5 6 5 4 3 7 6 6 10 5 13 9 4 6 6 7 7 7 5 6 22 16 5 223