Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1561 ATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGTTCTTTGGCCACCGCGAAGCTTACGGCTGAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATCTCTCTCTCACCACAGCTTCAATTGCTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGACAGTGAAAAAGATGATCGCCCGGTCCTCTCAGCCGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCGCCTTCCTTGCAAACTCTTCTTGAGGATGTTCCTAATCAAGCATCTGTTCATCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAGAGCAAATCTGCTGATAAAAGTTCGAGGAGTCGGAAACTTAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCAATTTGTCACGAACAGATTGCTGAGCAAGCAGTGGAGCACATCCATCAAAACGAGGTAATATTAACTCTTGGGAGTTCCCGAACAGTATTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATACCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGGGTGAATATGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGCGGTGTCATGGCACCTGTTGGATTGAATATGTTGGCTCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTATGCCCTTTGTATCCTCACAATCCTGAAGTTCTACTCAATGAACTGAGATCCCCATCAGAGCTACTGGACTTCGGTGAATTTTCAGATTGCTTGGACTTTGGAACTAACACTGGTTCTCCTCTTCTCCACGTGGTCAACCCTACATTTGACTATGTGCCACCATCACTCATTAGTTTATTTATTACTGACACAGGTGGTCATAACTCATCCTACATGTATCGCCTTATTGCTGATTACTATTCAGCTGATGATTTGGTAATTAAACGAAGGCCTTCTACAGGGAGCTGA 1254 44.82 MPDVQALVNDFVIKLKKRKIEGSLATAKLTAELLRSVISQQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLSLAAVSDDEDDSEKDDRPVLSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIAICHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMLALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCLDFGTNTGSPLLHVVNPTFDYVPPSLISLFITDTGGHNSSYMYRLIADYYSADDLVIKRRPSTGS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14435666 14445694 - Tan0001782.3 Tan11g1561 768498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1561 417 Gene3D - 194 401 IPR042529 -
Tan11g1561 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 406 IPR037171 -
Tan11g1561 417 FunFam translation initiation factor eIF-2B subunit beta 194 402 - -
Tan11g1561 417 MobiDBLite consensus disorder prediction 143 161 - -
Tan11g1561 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 408 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Tan11g1561 417 Pfam Initiation factor 2 subunit family 165 389 IPR000649 GO:0044237(InterPro)
Tan11g1561 417 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1559 Tan-Chr11:14435666 Tan11g1561 Tan-Chr11:14435666 8.70E-213 dispersed
Tan11g1561 Tan-Chr11:14435666 Tan11g1563 Tan-Chr11:14435666 1.10E-212 dispersed
Tan11g1560 Tan-Chr11:14435666 Tan11g1561 Tan-Chr11:14435666 1.10E-212 tandem
Tan11g1561 Tan-Chr11:14435666 Tan11g1562 Tan-Chr11:14435666 1.10E-212 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1561 K03754 - csv:101220366 729.169