Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1580 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTATCAGAGACAGAGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGAATGAGGAACAAGAGATTAGCCACACTGACAGCACCATCGCCGCCGAAAGCGACAACGAGACGAGAGGAGGATGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTTGCCATTGCGAGTACTGCAGCGGCCCAAGCGGCGGTTGCAGCTGCTAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCCCTCAATGTAATCAACAAGAGGCTGCAGATGAAGCCTTTAAACCTCTCAAGAAGGCCCCTCCATCTGATCTCCATAAACGTGAAAGGGAAATACATGAGTTTGCTGCTATTATTATCCAAACTGCTTTCCGTGGTTTCCTTGCAAGGAAAGCATTGAGAGCACTAAAAGGAATAGTGAGGCTACAGGCAATTATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCTACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATCGACTTCATCTTCCTCGAAACACTTTCAATTCTCCTGAAACGAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAATGGTCAAAGGTGGGATGACAGCCTGCTATCGAAAGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGAAGAGAACGAGTCAAAGAATACTTGTTCGCTCACAGGAGATCTGCAGAATCAGAACGAAAGAACGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACACAACTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCCTTTTCACCTCAAATTCAAAACACAAAGAGACAGAAGACGGATTCAAACCAAACCCAACAACAAAAAACATGGACAGAACCATAATAGAACTCCCCAACCAATCCCCGTCTCAAAAAGAAAAACAATCTCTGAAAAAGCTCTCACACCACAGCAAGCAACGTTCATTGGGGGGCGGAATAGACTTAAACAACAGCTCATTTTCAAGCTCCCCATTGGTGCCAACATACATGGCAGCCACAGAATCTGCAAAGGCAAAAGCAAGGTCGTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGGATTGGACACATGCTCAGATGGGAATTCCCCATGTAAGACAAAGCAGCTCAGTTTGGTGTCATCAATAGCGAGTGAAGTGACAATCAGCAGTGGAAGAAGGGGTTTTCAGCAGCAGAGATCACCGGGGCTGAAGGGGCTTCCAGGGCCAACTAGATCAAGCAGAAATCTCTCAAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1434 46.51 MGKKKGWFYLVKKLFVSETEPKPEKKQKRWKWVFGRMRNKRLATLTAPSPPKATTRREEDEEEEERKQALSVAIASTAAAQAAVAAAKAAVEVVWLTGTPQCNQQEAADEAFKPLKKAPPSDLHKREREIHEFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHLPRNTFNSPETKQLQSLKDKIIKLDSNGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKNVRGRWRYWLDQWVDTQLSKSKELEDLDSLFTSNSKHKETEDGFKPNPTTKNMDRTIIELPNQSPSQKEKQSLKKLSHHSKQRSLGGGIDLNNSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSIASEVTISSGRRGFQQQRSPGLKGLPGPTRSSRNLSKDLSIDSEHSLPNWDRQSAFQ 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14727614 14731495 - Tan0016545.2 Tan11g1580 768517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1580 477 ProSiteProfiles IQ motif profile. 155 182 - -
Tan11g1580 477 MobiDBLite consensus disorder prediction 53 68 - -
Tan11g1580 477 PANTHER IQ-DOMAIN 5-RELATED 11 413 - -
Tan11g1580 477 MobiDBLite consensus disorder prediction 385 409 - -
Tan11g1580 477 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515(InterPro)
Tan11g1580 477 Pfam Protein of unknown function (DUF4005) 363 437 IPR025064 -
Tan11g1580 477 ProSiteProfiles IQ motif profile. 131 159 - -
Tan11g1580 477 MobiDBLite consensus disorder prediction 330 363 - -
Tan11g1580 477 MobiDBLite consensus disorder prediction 428 477 - -
Tan11g1580 477 Gene3D - 131 183 - -
Tan11g1580 477 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Tan11g1580 477 MobiDBLite consensus disorder prediction 449 477 - -
Tan11g1580 477 MobiDBLite consensus disorder prediction 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1580 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1579 Tan-Chr11:14727614 Tan11g1580 Tan-Chr11:14727614 2.20E-233 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35