Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1640 ATGAATGGGAAGGATGAATTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTAATCTCGCTAATGAGTCTGTGGGATTCGTTTCGACCGGGAATCCCCCGGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTCCAAGTTCAATGTCTAACTTATTTACTCCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGGTTCTGCAGCACCTTTAATGAACAAAACAGCTTAGCTCCTTCTAATACGACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAGTAGTGATAGAATGCTGGGTATGGATTGGAACCAACAAAATCCTTGGATGAAAGGAGTTCTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAACTACCAGCTGATTCGGCATTCATAGAGCGTGCAGCACGGTTCTCATGCTTCAATGGTGGAGTTTTTGGGGCTCCGCCCACCGGTCCATTTGGTATTTCAGACTCTGTAGGCATTCATCCTAGGGGTGGATTTGGAAGGCAAGAAGTTATGTCCGGAAATGGAGCCTCCAAAGATGTTTCTTTGCCTATGGAGCTTGAGGCTAAAGAAAAGAGTCCACCAAAGAATGAAAAAGAAAGTGAGATGTCTCAAGACAGGGCTAAACAAGGCTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGCGGTCAAGACGAGCGATGCACGTTGGGAGGTACTATCACAGAACCCTCTGGGGAAGGACTGTTCTTCAAGAAAAGGAAAAGGGGTGAACAGAATATGGGACTTGGACAAGTTAATGAAGCTCCACAACAAATTAACGAAACTGCAAAGAACGGAGCATTAAATCAGCAGAAGGGAAACCCAAGCCCAAGTTCTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCCCAAGCATCGGATGCTCCCAAAGAAGAATATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTATTTGGTTTTCCTCCTGATCTGCCTATGCCTTACCTCCCACAGCATCCGTCTCACCATGGACTTATTCCACCTTGTCTTTCAAACATGGGGAGCTCTCCGGACCTGCTACGAAGAACAATTAATTCCCAGCTGACATCACTGGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAACGTGTGGGAGAATGAGCTCCACAATGTTGTTCCGATGAACTTTGATGTCGCCGCTCCCTCCAATGGCCAAGATGTCGATGGTTCTACTCCACCATGCAGCACCAGAGCAGAACTCTAA 1599 45.84 MNGKDEFEVESRTSDPMSISSGWQFAAANLANESVGFVSTGNPPVVSNGDLGVSSCPPSSMSNLFTPTLLNHHTDSQNSGFCSTFNEQNSLAPSNTTVVDGEGLNSLRSSSDRMLGMDWNQQNPWMKGVLSANVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPTGPFGISDSVGIHPRGGFGRQEVMSGNGASKDVSLPMELEAKEKSPPKNEKESEMSQDRAKQGCVGESGNESDEAGFSGGQDERCTLGGTITEPSGEGLFFKKRKRGEQNMGLGQVNEAPQQINETAKNGALNQQKGNPSPSSTTNKPAGKQGKQDSQASDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFGFPPDLPMPYLPQHPSHHGLIPPCLSNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNVWENELHNVVPMNFDVAAPSNGQDVDGSTPPCSTRAEL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15877923 15880565 + Tan0008078.1 Tan11g1640 768577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1640 532 Pfam Helix-loop-helix DNA-binding domain 349 397 IPR011598 GO:0046983(InterPro)
Tan11g1640 532 MobiDBLite consensus disorder prediction 512 532 - -
Tan11g1640 532 FunFam Basic helix-loop-helix transcription factor 343 415 - -
Tan11g1640 532 SMART finulus 352 402 IPR011598 GO:0046983(InterPro)
Tan11g1640 532 MobiDBLite consensus disorder prediction 301 327 - -
Tan11g1640 532 MobiDBLite consensus disorder prediction 187 269 - -
Tan11g1640 532 MobiDBLite consensus disorder prediction 206 228 - -
Tan11g1640 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 415 IPR036638 GO:0046983(InterPro)
Tan11g1640 532 Gene3D - 343 417 IPR036638 GO:0046983(InterPro)
Tan11g1640 532 MobiDBLite consensus disorder prediction 516 532 - -
Tan11g1640 532 MobiDBLite consensus disorder prediction 301 333 - -
Tan11g1640 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983(InterPro)
Tan11g1640 532 CDD bHLH_AtBPE_like 336 421 - -
Tan11g1640 532 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 143 446 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1689 Tan-Chr2:79311745 Tan11g1640 Tan-Chr11:15877923 5.30E-37 dispersed
Tan04g0944 Tan-Chr4:8332786 Tan11g1640 Tan-Chr11:15877923 3.00E-106 dispersed
Tan04g0945 Tan-Chr4:8332786 Tan11g1640 Tan-Chr11:15877923 3.00E-106 dispersed
Tan05g1303 Tan-Chr5:15486171 Tan11g1640 Tan-Chr11:15877923 1.20E-35 dispersed
Tan08g1454 Tan-Chr8:59458293 Tan11g1640 Tan-Chr11:15877923 3.80E-34 dispersed
Tan09g1896 Tan-Chr9:70106179 Tan11g1640 Tan-Chr11:15877923 2.60E-29 dispersed
Tan10g1180 Tan-Chr10:11869697 Tan11g1640 Tan-Chr11:15877923 1.20E-41 dispersed
Tan10g1181 Tan-Chr10:11869697 Tan11g1640 Tan-Chr11:15877923 1.20E-39 dispersed
Tan10g2095 Tan-Chr10:67241050 Tan11g1640 Tan-Chr11:15877923 7.30E-12 dispersed
Tan11g1640 Tan-Chr11:15877923 Tan11g1862 Tan-Chr11:23161454 3.60E-22 dispersed
Tan11g1640 Tan-Chr11:15877923 Tan02g0786 Tan-Chr2:7608675 1.50E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28761 PF00010 HLH 6.50E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1640 - - - 0.0