Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1696 ATGGTGCTGCCCAAAACTTTCTCAGAATCTGATGTTTCTATACATTCCACTTTTGCCTCTCGCTATGTCCGTGACTCTGCTCCAAGATTCACCATGCCTGAAAACTCCATGCCCAAGGAGGCCGCCTTTCAGATCATCAACGACGAGCTCATGCTCGATGGCAACCCAAGGCTTAATTTAGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTCATTATGGACTCTGTCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTTCAAAACCGATGCGTGAACATGATTGCCCATCTCTTCAACGCTCCGTTGGGAGACTCCGACACGGCGGTCGGAGTCGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCGGAGGGAAAGCCATACGAGAAGCCGAATATAGTGACGGGTGCGAATGTTCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCCGTGGAGATGGTGGATGAGAACACCATTTGCGTTGCTGCCATTTTGGGCTCTACTTACAATGGAGAATTTGAAGATGTGAAGCTGTTGAATGATTTATTGGTGGAGAAGAATAAGGAAACAGGATGGGATACTCCCATTCACGTCGATGCAGCAAGCGGTGGATTCATAGCACCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGACTTCCATTGGTGAAGAGCATCAACGTCAGTGGCCACAAATATGGACTTGTGTATGCTGGAATCGGTTGGGTCATTTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCACATCAATTACCTTGGAGCGGATCAGCCCACCTTCACTCTCAACTTCTCCAAAGGGTCTAGCCAGATCATTGCTCAATATTACCAACTAATCCGCTTGGGTTATGAGGGATACAGGAATGTGATGCAAAATTGTCACGACAACGCAATGGTGTTGAAGGAAGGACTTGAAAACACAGGGAGGTTCACCATAGCATCAAAGGACATGGGAGTGCCAGTGGTTGCATTCTCTCTCAAAGACAGAAGCCGCCACGATGAGTTTGAGGTGTCAGAGATGTTGCGCCGCTTTGGTTGGATCGTGCCTGCATATCCAATGCCAGAGGGCGCAAAGCATGTCTCAGTTCTTCGTGTGGTCATTAGAGAGGACTTTTCTCGAACACTTGCAGAGCGTCTTGTGCTTGATATCATAAAGGTTCTGGCCGAGCTTGATACTCTCCCACCCAAGAATGCTGTAAAAATAACAAGCTTAGAAAAGGGCGAGAATGGAAAAAACGAGACAGCGGTGAAGATTAAGAAGACGGCAGAGGAAATAGAGAGAGAAATAGCGAGTTATTGGAGGAATATAACTAAGGCTAGAAAAATTAAGGTTGCTGCGGATCAGGCTGGTCCTTCAGTTACAGTCGTTGCTAAATAA 1539 47.82 MVLPKTFSESDVSIHSTFASRYVRDSAPRFTMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMQNCHDNAMVLKEGLENTGRFTIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIIKVLAELDTLPPKNAVKITSLEKGENGKNETAVKIKKTAEEIEREIASYWRNITKARKIKVAADQAGPSVTVVAK 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16492666 16494787 + Tan0008145.1 Tan11g1696 768633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1696 512 CDD DOPA_deC_like 59 439 - -
Tan11g1696 512 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Tan11g1696 512 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Tan11g1696 512 Gene3D - 1 65 - -
Tan11g1696 512 FunFam Glutamate decarboxylase 1 65 - -
Tan11g1696 512 FunFam Glutamate decarboxylase 66 360 - -
Tan11g1696 512 Gene3D - 361 448 - -
Tan11g1696 512 FunFam Glutamate decarboxylase 361 448 - -
Tan11g1696 512 Gene3D - 66 360 IPR015421 -
Tan11g1696 512 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Tan11g1696 512 PANTHER GLUTAMATE DECARBOXYLASE 1 495 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1429 Tan-Chr11:12840490 Tan11g1696 Tan-Chr11:16492666 4.10E-246 dispersed
Tan11g1695 Tan-Chr11:16443727 Tan11g1696 Tan-Chr11:16492666 1.60E-293 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1696 K01580 - csv:101208026 969.533