Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1709 ATGTTGAAAGCTTCTTCTTCTTCTGCAGTAGCAGAAGCAGTAGCTACAGCTTCTTCTTCTGGTGGTCCAACTCCCAATTCTGAGCATGGGGTCACCAGCAAAAGAAAAAGAAGACCTGCAGGAACCCCAGATCCGGATGCGGAAGTGGTTTCTTTATCGCCAAAAACACTTTTGGAATCGGATCGTTATGTTTGTGAGATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTGCAGATGCACCGCCGCCGTCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGCGGAGACGGCGGAGGCTGTCAAAAAAAAGGTCTTTGTTTGTCCTGAACCTACTTGTCTCCACCATGACCCTTGCCACGCTCTTGGTGACCTCGTCGGCATCAAAAAGCACTTCCGGAGAAAGCATAGCAACCAGAAGCACTGGGTTTGTGATAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAACACCAAGACGCTTGCAATCTCCGGCAGATGAGGTCCGATCAGTTGCATCCGACGGTGGTGCCGCCACTGCCGCCGTTACTGCAACCCTACTCACGATCAATTTCTTACACCGGTGCCTCCACCAGCAACGATCATAGCTTTCAAAATATGGCTACTCCATTAAGAGGGTTTCCAATCTTATCATCAAACACGGATCGAAACATCAACATTAATTTACCCGATCACCATGATCTTGAGCTCCATCTTTCTTCTCCAAGCTCGGCATTTCTGAAGCTCTCAATTGGGTCCAACAAGGAGCCGAGCGACGAGCGTCAGCTCGATCTGGCGATAGCGGAGAAGGCGTATGCAGAAGAAGCGAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAAGTCGAGTTCGCAAATGCCAAAATGATACGGCAGCAAGCTCAAGCGGAGTTGGAGAAGGCAAGAATCTTGAAGGAAGAAGCCAACCGGAAAATGACCTCCACCATTATGGAAATCACTTGTCAAACATGCCGGCTGCACTTCCACATGAGCTCCGCCGTGCCCGAGGAGACCTCGCTCGCCATCAGCTACATGTCGTCCGCTACGACCGAAGGTGATGGAGAGTGA 1173 50.38 MLKASSSSAVAEAVATASSSGGPTPNSEHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQMRSDQLHPTVVPPLPPLLQPYSRSISYTGASTSNDHSFQNMATPLRGFPILSSNTDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPSDERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEANRKMTSTIMEITCQTCRLHFHMSSAVPEETSLAISYMSSATTEGDGE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16778063 16780144 - Tan0016295.1 Tan11g1709 768646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1709 390 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 341 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan11g1709 390 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tan11g1709 390 Gene3D Classic Zinc Finger 127 202 - -
Tan11g1709 390 Gene3D Classic Zinc Finger 41 109 - -
Tan11g1709 390 Coils Coil 291 346 - -
Tan11g1709 390 MobiDBLite consensus disorder prediction 1 29 - -
Tan11g1709 390 SMART c2h2final6 106 136 IPR013087 -
Tan11g1709 390 SMART c2h2final6 63 85 IPR013087 -
Tan11g1709 390 SMART c2h2final6 142 169 IPR013087 -
Tan11g1709 390 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 169 191 - -
Tan11g1709 390 MobiDBLite consensus disorder prediction 1 52 - -
Tan11g1709 390 FunFam protein indeterminate-domain 12-like 42 112 - -
Tan11g1709 390 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 142 165 - -
Tan11g1709 390 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 102 136 - -
Tan11g1709 390 SUPERFAMILY beta-beta-alpha zinc fingers 62 162 IPR036236 -
Tan11g1709 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3379 Tan-Chr5:85654811 Tan11g1709 Tan-Chr11:16778063 3.30E-90 dispersed
Tan05g3380 Tan-Chr5:85654811 Tan11g1709 Tan-Chr11:16778063 1.50E-64 dispersed
Tan09g0200 Tan-Chr9:11128365 Tan11g1709 Tan-Chr11:16778063 4.10E-56 dispersed
Tan11g1709 Tan-Chr11:16778063 Tan03g1962 Tan-Chr3:74734412 7.10E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28763 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1709 K25871 - csv:101210468 637.876