Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan11g1746 | ATGGAACACCTTTTGGGTCTTCTCCGAATTCGGGTGTTGCGCGGTGTTAATCTCGCTGTTCGTGATACTCGTAGCAGCGATCCTTTTGTCGTCGTCACAATGGGCGAGCAGAGTTTGAAGACCCGTGTAGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACTCTCTCAATTGCAGATCTTAGGACTCCAATCGGTTTATCAGTGTTTGACAAAGACACACTAACAGACCACGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAGTGTTTGAAGATGGGACTTGAAAAACTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAGCAGAACAAACTATTTAGCTGATGAGAGCCAATGTGTTTGGAACAAGGGAAAAATTGTACAGAACATGCACCTTAGATTGAAGAATGTAGAGTGTGGTGAGGTGGGGATTCAGATCGAATGGATCGACGTTCCTGGTTCTAAGGGTCTGCCGAGAGAGGGTACGAGTGGCTTCTGA | 522 | 45.4 | MEHLLGLLRIRVLRGVNLAVRDTRSSDPFVVVTMGEQSLKTRVVKNNCNPEWNDELTLSIADLRTPIGLSVFDKDTLTDHDKMGDAEIDIEPYIECLKMGLEKLPDGCVVKRVYPSRTNYLADESQCVWNKGKIVQNMHLRLKNVECGEVGIQIEWIDVPGSKGLPREGTSGF | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 17730282 | 17732375 | + | Tan0016375.1 | Tan11g1746 | 768683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan11g1746 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Tan11g1746 | 173 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Tan11g1746 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 149 | IPR035892 | - | |
| Tan11g1746 | 173 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Tan11g1746 | 173 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Tan11g1746 | 173 | Gene3D | C2 domain | 5 | 168 | IPR035892 | - | |
| Tan11g1746 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g1551 | Tan-Chr4:23410357 | Tan11g1746 | Tan-Chr11:17730282 | 5.20E-60 | dispersed | |
| Tan09g1817 | Tan-Chr9:69593688 | Tan11g1746 | Tan-Chr11:17730282 | 9.20E-55 | dispersed | |
| Tan11g1555 | Tan-Chr11:14351095 | Tan11g1746 | Tan-Chr11:17730282 | 4.40E-28 | dispersed | |
| Tan11g1746 | Tan-Chr11:17730282 | Tan05g2189 | Tan-Chr5:72792891 | 7.30E-57 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan11g1746 | - | - | - | 0.0 |