Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1757 ATGAAAATGCTGTCTTATCTTCTTCTCTTTTCATTACTATTCATCCATGGCAAAAGCTTCAATAATCCCATGTCTTGCTCCCAAACCCCATATCCAGACCTTTGCTTCCATTTCATCAACCAAAACGACGACGTATCGACCGCTAATATCGATGATACTTCTCACATCACTCGCTTTCAAAACTCCGCCATTCGAGCCACTCTGAACCAAGCCATGGCAGCCCACGACCAACTTCGCTCCGCCATGGCTCTAAGTTCCTTCGATGATGATGACGATAGAGCTAAATTAGCTTTGATTGATTGTTTAGAACTCTACGAGGATTCGATCGCCGAACTCAACCGTTCGGCGATCAACTCCGTGAGTGCCAACCCGATCCATGACTTGACATTGCTAAGCGCTTCACTAGCGAACCATCAAACATGTCAAGATGGTTTTCAAGATTTTGGATTTTCTTCTGATCATTTGAAATCCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGCTCAGCAACTCTCTCGCCATCGCCGCCACCACCGCTACCACTATTGCAGCAACTTCCTCCACCACCGGTGGCCGGCGGTTGCTTGTCAGCTCGTTTCCTAAGTGGGTTTCCAGTAATGATAGGAAGCTCGTCCAGAACACGGCCGGAAAGGCGGCGGATATGGTGGTGGCGCAAGATGGGAGCGGCGATTTTAAGACGATATCGGAGGCGGTGGCGGTGGCGGCAGAGGTGAGGAAGGGAAGCGGAAGGTTTGTTATATATGTAAAAGGTGGGGTTTACAGAGAGAATGTTGTGATTAAGAAGACGATGAAGAATGTTATGATGATCGGAGATGGGATTGATTCGACGATCATTACAGCGATGAAGAACGTCCAAGATGGATCAACCACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAGGGGTTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGACCAGAGAAACACCAAGCCGTCGCACTCCGATCAAACGCCGATCACTCAGTTTTCTATCGATGCAGCTTCAAAGGCTATCAAGACACTCTATACGCCCATTCCAACCGCCAGTTCTACCGTGAATGCCATATTTACGGAACCGTCGACTTCATATTCGGCGACGGCGCCGCCGTATTTCAAGACTGCAATATCTTCGTCAGAAAGCCGATGATGAACCAGAAAAACACCGTCACGGCGCAGGCGAGATCCGACCCGAATGAGAACACTGGGTTCGTGATCCACAATTCCGTCGTCGGACCGGCGCCGGACCTGAAGCCGGTGGAGGGTCTGTATGAAACTTACTTGGGGAGGCCGTGGAAGGCGTATTCGAGGACGGTGGTAATGAGGAGTTTGTTGGGTGGGCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGAACGGTTTATTATGCCGAGTTTATGAACACCGGCGGCGGGGCGAGTACGACGGGGAGGGTGCGGTGGCCGGGATATCGTGTGATAACGAGTGCGGCGGAGGCCGGGAGGTTTACGGTGAACAGTTTCTTGGAAGGAGGCGGTTGGATTCCGGCCACCGGAGTGCCGTTTGCAAATGGGTTATAA 1611 50.96 MKMLSYLLLFSLLFIHGKSFNNPMSCSQTPYPDLCFHFINQNDDVSTANIDDTSHITRFQNSAIRATLNQAMAAHDQLRSAMALSSFDDDDDRAKLALIDCLELYEDSIAELNRSAINSVSANPIHDLTLLSASLANHQTCQDGFQDFGFSSDHLKSFFPFQILSNFSKLLSNSLAIAATTATTIAATSSTTGGRRLLVSSFPKWVSSNDRKLVQNTAGKAADMVVAQDGSGDFKTISEAVAVAAEVRKGSGRFVIYVKGGVYRENVVIKKTMKNVMMIGDGIDSTIITAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADHSVFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGAAVFQDCNIFVRKPMMNQKNTVTAQARSDPNENTGFVIHNSVVGPAPDLKPVEGLYETYLGRPWKAYSRTVVMRSLLGGLIEPAGWLPWAGDFGLRTVYYAEFMNTGGGASTTGRVRWPGYRVITSAAEAGRFTVNSFLEGGGWIPATGVPFANGL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18067381 18071957 - Tan0013853.1 Tan11g1757 768694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1757 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 178 IPR035513 -
Tan11g1757 536 FunFam Pectinesterase 217 536 - -
Tan11g1757 536 Gene3D - 218 536 IPR012334 -
Tan11g1757 536 Pfam Plant invertase/pectin methylesterase inhibitor 25 177 IPR006501 GO:0004857(InterPro)
Tan11g1757 536 NCBIfam pectinesterase inhibitor domain 24 177 IPR006501 GO:0004857(InterPro)
Tan11g1757 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 180 IPR035513 -
Tan11g1757 536 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Tan11g1757 536 CDD PMEI-like_3 25 175 - -
Tan11g1757 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan11g1757 536 PANTHER PECTINESTERASE 18 527 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan11g1757 536 SMART PMEI_2 15 177 IPR006501 GO:0004857(InterPro)
Tan11g1757 536 ProSitePatterns Pectinesterase signature 1. 250 269 IPR018040 -
Tan11g1757 536 SUPERFAMILY Pectin lyase-like 219 534 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0472 Tan-Chr7:8595177 Tan11g1757 Tan-Chr11:18067381 5.90E-122 dispersed
Tan10g0388 Tan-Chr10:3042124 Tan11g1757 Tan-Chr11:18067381 3.10E-113 dispersed
Tan10g0389 Tan-Chr10:3069015 Tan11g1757 Tan-Chr11:18067381 6.60E-130 dispersed
Tan11g1757 Tan-Chr11:18067381 Tan11g2250 Tan-Chr11:63415248 9.60E-108 dispersed
Tan11g1757 Tan-Chr11:18067381 Tan06g0058 Tan-Chr6:751932 3.10E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1757 - - - 0.0