Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1763 ATGGGTGATGTGAAGGACAAGGTCAAGGGTTTCATGAAACGGTTTAATAATCCGTTGTCCTCATCTTCTTCCGCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCGGGGTCGACTACTTCTTTGCCTGGCCGCTCATCGCAAAATCCCATTTCCAAGCCGAACCTGGTTAATCCACCTTCGGATTCCCCGGTAAATTCTAAGCCCCCGGTTGCGAATTCAATTGGCACTGGTCAAAACAGATCAGAACTGTCGAATAAATCGAACCCAGATCGTATGCCGGCGGATGGATTCGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCGTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGTTGTGTCAATGATAATACAGCCAAGAGACCAGCAGCTCTGCCCACGAATGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGGCACTTTCTTATCAGCGAAGCCATCACAAAGCTCATTGGAAATCGTTCTGAAGCTTTTGAAGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAGATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGAAAGAAATTAACACATTAAGCAAGGTTATAGATTCAATTGAACGGCCAAAGCTTGATGAACAGCGAAAGAAAGACAGCACAGCGTCTAAGGCTTCAACTCAGGTTGATGAACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCAAACATTGAGCTACCAGACTCCTTCTACAACCTCTCTTTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCAAAATCATACAAGGAAAAACAGGCAAAAACTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAGTTTCCCGATGGCGTGGTACTTCAAGGCGTTTTTTCTCCTCGGGAACCAACAACTGCTCTATATGAGTTTGTGAGCGCAGCACTGAAAGAACCCAGTTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAACGGCGTACAATCGCACATTTTCCTGCAGAAGGAGAGAAAGCTAAAACACTAGATGACGAGGAGTTAGTCCCCTCAGCTCTTGTCAAGTTTAGACCCATCGAAACAGATTCTGTTGTCTTCACAGGTTTGCGTAATGAGCTCCTTGAGATCATTGAACCACTCGTTAGCAGTTCAGCAGTGGCTCCTCCTGCACAAGTTTAA 1440 44.31 MGDVKDKVKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPGRSSQNPISKPNLVNPPSDSPVNSKPPVANSIGTGQNRSELSNKSNPDRMPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHVDSCVNDNTAKRPAALPTNDAESRSELEACVGTFLSAKPSQSSLEIVLKLLKNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWATMEVPTEKEINTLSKVIDSIERPKLDEQRKKDSTASKASTQVDELIEPKKVDRQIRVFFAVPENVAANIELPDSFYNLSFEEVKREAIMRKQKIAESQLLVPKSYKEKQAKTARRKYTRTVIRIQFPDGVVLQGVFSPREPTTALYEFVSAALKEPSLEFELIHPVGVKRRTIAHFPAEGEKAKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSSSAVAPPAQV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18310174 18319884 - Tan0016178.1 Tan11g1763 768700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1763 479 SUPERFAMILY Ubiquitin-like 330 443 IPR029071 -
Tan11g1763 479 Gene3D - 353 445 - -
Tan11g1763 479 ProSiteProfiles UBX domain profile. 359 443 IPR001012 GO:0005515(InterPro)
Tan11g1763 479 Pfam UBX domain 360 439 IPR001012 GO:0005515(InterPro)
Tan11g1763 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 154 IPR013087 -
Tan11g1763 479 CDD UBX_UBXN6 364 444 - -
Tan11g1763 479 MobiDBLite consensus disorder prediction 1 103 - -
Tan11g1763 479 Pfam PUB domain 181 256 IPR018997 -
Tan11g1763 479 SUPERFAMILY PUG domain-like 179 244 IPR036339 -
Tan11g1763 479 CDD PUB 170 266 - -
Tan11g1763 479 SMART PGNneu 183 250 - -
Tan11g1763 479 SMART ubx_3 355 445 IPR001012 GO:0005515(InterPro)
Tan11g1763 479 SMART c2hc_5 122 146 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Tan11g1763 479 Gene3D - 176 267 - -
Tan11g1763 479 FunFam UBX domain-containing protein 6 353 444 - -
Tan11g1763 479 MobiDBLite consensus disorder prediction 15 92 - -
Tan11g1763 479 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - GO:0050832(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0796 Tan-Chr8:8952864 Tan11g1763 Tan-Chr11:18310174 1.20E-06 dispersed
Tan08g0797 Tan-Chr8:8953899 Tan11g1763 Tan-Chr11:18310174 1.00E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28772 PF00789 UBX 2.00E-06 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1763 K14011 - csv:101209321 794.653