Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1776 | ATGGCGGCCTCTGCCCAACAGACCCCTCTCTTACGTTCCCGTCACCCTTCCAACTCCGACGGCTCCACTTCCCCCATCGCCCCTCTCGCCGTCCTCTTCGGCCGCGCCATTGGTCGCCGTGGAACTTCTATGGTGGTTCGCGAGACGGCGGCGCGTGAACTTGAAGAGCGCCGCATGGATTGGGGCTACTCCAAGCCTGTGGTGGCGCTTGACATTGGGTGGAATTTGGCTTTCGTTTTCGTTTCCTTGGGTGTCCTTTTTCACTCGGCCGATGAAGAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTGGAGTTCAGAAGGAGGAATGCGAGTGGGGCTAGGGATATGGAGACGCAGCAACAGCCGCAGCCTGACAGTGATGGATATGTTGCGAATGAAAGCGATGAAGAAGATGGTAGCCCGAGGAATCTGTCCGGTGTTGCCAAAAGATGTGAGTCAGCGAACACCCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGTGGTAACATCCTCCTGCAGAATGCTCCATCGTTATACTGGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACTGATGCAGATTTAAGTATGCTTCCTAAGTATAGATATCAAGTGTCCAACAATCCTTCTCCGGGGGACGGGTTGATGGTTCCTCTTCAAACAAGCAGCAGATACTTGACAACTGAACGTGTTCTGTTACGTGAGGATGCGGAGTGCTGTATATGTCTTAGCCCATATGAGGATGGAGTCGAACTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTTTGTGCAAGTACAACATTCTAAAAAACTGTGAACCTGTGTAA | 1047 | 49.76 | MAASAQQTPLLRSRHPSNSDGSTSPIAPLAVLFGRAIGRRGTSMVVRETAARELEERRMDWGYSKPVVALDIGWNLAFVFVSLGVLFHSADEEPNTPIRLWILVYAAQCLVHAVLVWLEFRRRNASGARDMETQQQPQPDSDGYVANESDEEDGSPRNLSGVAKRCESANTLVSLIWWLFGFYWVVAGGNILLQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYQVSNNPSPGDGLMVPLQTSSRYLTTERVLLREDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEPV | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 18586877 | 18591005 | - | Tan0012355.1 | Tan11g1776 | 768713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1776 | 348 | ProSiteProfiles | Zinc finger RING-type profile. | 297 | 338 | IPR001841 | - | |
Tan11g1776 | 348 | FunFam | E3 ubiquitin protein ligase RIE1 | 277 | 345 | - | - | |
Tan11g1776 | 348 | CDD | RING-H2_PA-TM-RING | 296 | 338 | - | - | |
Tan11g1776 | 348 | MobiDBLite | consensus disorder prediction | 128 | 159 | - | - | |
Tan11g1776 | 348 | SMART | ring_2 | 297 | 337 | IPR001841 | - | |
Tan11g1776 | 348 | PANTHER | TARGET OF ERK KINASE MPK-1 | 35 | 342 | - | GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Tan11g1776 | 348 | MobiDBLite | consensus disorder prediction | 129 | 143 | - | - | |
Tan11g1776 | 348 | SUPERFAMILY | RING/U-box | 283 | 343 | - | - | |
Tan11g1776 | 348 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Tan11g1776 | 348 | Pfam | Ring finger domain | 296 | 338 | IPR001841 | - | |
Tan11g1776 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 343 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan11g1776 | Tan-Chr11:18586877 | Tan11g1777 | Tan-Chr11:18586877 | 1.10E-136 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1776 | - | - | - | 0.0 |