Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1776 ATGGCGGCCTCTGCCCAACAGACCCCTCTCTTACGTTCCCGTCACCCTTCCAACTCCGACGGCTCCACTTCCCCCATCGCCCCTCTCGCCGTCCTCTTCGGCCGCGCCATTGGTCGCCGTGGAACTTCTATGGTGGTTCGCGAGACGGCGGCGCGTGAACTTGAAGAGCGCCGCATGGATTGGGGCTACTCCAAGCCTGTGGTGGCGCTTGACATTGGGTGGAATTTGGCTTTCGTTTTCGTTTCCTTGGGTGTCCTTTTTCACTCGGCCGATGAAGAACCCAATACGCCAATTCGGCTTTGGATTTTAGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTGGAGTTCAGAAGGAGGAATGCGAGTGGGGCTAGGGATATGGAGACGCAGCAACAGCCGCAGCCTGACAGTGATGGATATGTTGCGAATGAAAGCGATGAAGAAGATGGTAGCCCGAGGAATCTGTCCGGTGTTGCCAAAAGATGTGAGTCAGCGAACACCCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGTGGTAACATCCTCCTGCAGAATGCTCCATCGTTATACTGGCTGGCTGTCGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACTGATGCAGATTTAAGTATGCTTCCTAAGTATAGATATCAAGTGTCCAACAATCCTTCTCCGGGGGACGGGTTGATGGTTCCTCTTCAAACAAGCAGCAGATACTTGACAACTGAACGTGTTCTGTTACGTGAGGATGCGGAGTGCTGTATATGTCTTAGCCCATATGAGGATGGAGTCGAACTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTTTGTGCAAGTACAACATTCTAAAAAACTGTGAACCTGTGTAA 1047 49.76 MAASAQQTPLLRSRHPSNSDGSTSPIAPLAVLFGRAIGRRGTSMVVRETAARELEERRMDWGYSKPVVALDIGWNLAFVFVSLGVLFHSADEEPNTPIRLWILVYAAQCLVHAVLVWLEFRRRNASGARDMETQQQPQPDSDGYVANESDEEDGSPRNLSGVAKRCESANTLVSLIWWLFGFYWVVAGGNILLQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYQVSNNPSPGDGLMVPLQTSSRYLTTERVLLREDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEPV 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18586877 18591005 - Tan0012355.1 Tan11g1776 768713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1776 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Tan11g1776 348 FunFam E3 ubiquitin protein ligase RIE1 277 345 - -
Tan11g1776 348 CDD RING-H2_PA-TM-RING 296 338 - -
Tan11g1776 348 MobiDBLite consensus disorder prediction 128 159 - -
Tan11g1776 348 SMART ring_2 297 337 IPR001841 -
Tan11g1776 348 PANTHER TARGET OF ERK KINASE MPK-1 35 342 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan11g1776 348 MobiDBLite consensus disorder prediction 129 143 - -
Tan11g1776 348 SUPERFAMILY RING/U-box 283 343 - -
Tan11g1776 348 MobiDBLite consensus disorder prediction 1 23 - -
Tan11g1776 348 Pfam Ring finger domain 296 338 IPR001841 -
Tan11g1776 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 343 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1776 Tan-Chr11:18586877 Tan11g1777 Tan-Chr11:18586877 1.10E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1776 - - - 0.0