Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1796 | ATGGCGTTCCGATCCCGATTCATTCTGAAAAATCGGCGGCATTTTCATACGGTACCGCCAGAAATGTCCCTTCAACTCAGTCATCCACTCCCAATATTCCCCCGCCGGAACGGATTCCGGACCAAATCTCAGCCACCGGTGCCGCAGTCGATCGTCTCCTGCTCCGCCATCAACCGATACTCCGCCGGATGTAAACGGCAGTATACGAGTGTGATGATAGTCCCGACGGGCGTAGGCGCCGCCATTGGTGGATATGCAGGCGATGCTCTGCCGGTTGCTCGCGCTCTCGCCTCCGTCGTTGATTGCCTTATCACTCACCCTAACGTGCTTAATGCAGCAATGCTTTACTGGCCGATGCAAAATGTGCTTTATGTTGAAGGCTATGCACTCGATCGGTTTGCAGAAGGTTCATGGGCCCTAAAACCTGTTCATCAGAATCGGATAGGATTGGTTCTTGATGCTGGAATTGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAATATGTTGTCACAGAGACACCTTTAATGGTAGAGAAGTGGATCGATCCAAAAACTGGGCAATCAACTGGGAGGATTAGACACTCTGTCTCACTGCTGAGAGCCGTGCAGACATTAATGAACCAGTCAAAGGTGAATGCAGTTGCGGTTGTTGGACGATTCCCAGACGATGGTGTTGAAGAGACAGATAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAATTTCAGATCCCATGTGCTCATGCGCCTGCTTTATCACCAACTTCCTTATACCAATCTCTATCTCCAAAATCAGCAGCTGAGGAGTTAGGATACACGTTCTTACCATGTGTACTTTCTGGGCTAAGCAATGCGCCTCAATACTTGAGCGAGAGTTCTGAATTATTAGGGAAGGACTGCATATTGGCAAATGATGTTGATAGTGTCATTCTACCTATAGATGCTTGTGGAGGTGATGGCGCTCTTGCTTTTGCCAGAAGCAAACAGTACAAGCCACTTATTATTGCGGTGGAGGAAAATGAAACAGTTCTCAGCGTTTCTCCAGACTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTATTGCAGCTCACAAGGCAGGAATAGACCCCTATTCCCTGCGAAGAAATAGAGTCAACAACATTAAGTGCATTACCGCTTCATCTCCCAATGGTTACGTAGTTTCAAGTGCCTCTCAACAGTTCACGTACGTGGCAATGAGCAGCCACGACGACGACGGCCGGCGCCGTGCCTTAGCACTGCAACTTCTTGATCTTGTACGTGACTTTGTACTGATGTCAGGAAGGTCCATCGCCGGCTCTGGAGATGTCATGAAAAAGGATTGCACTGATCTCATCCGTCGGATTGCTCTCCTGATTCATCTGGCGGAGGAGATCACTAACTTCCGTGGTGGTGGCGGTGGCGACGACAATTTTGAGGAATTGAATGAGTCTGGTTTTTCTTCTTCTTCGTCTTCCTTGGATTGCCTTTCGGAGGTGGTCGGAGCAATTCAGGCGGCGAAGCGCCTTCTGTATGCCGCTTTGACTTTCTCTGGTATGGACGACCACGACGATGACGACGCTTGTGCGACTTCGACTGATGGAGCTACCAAAAAATTGGTTCTACAATTTCAGTACGTGACAACCAGATTGGAAACTGCACTCTCAAATTTGCCATACCATCACTTTTGTGTCTCAGATGAAGTTCAGGAACAGGTTGATTTGGTTAGAGCTCAGTTGAGGAGAGCATCAAATAAGTATGAATCTATGTCTAAACCTGCAGACAGGAAGCTTCAATCTCGAGGTTCTGTAAAATGGATGGTCAACAATGATGTCAAGAGCATGTCTAGTGTTGAAGATTCAGATGCAGAGTCTCACCACCGTCCCCGGAGCTGCGATGATCGGACGAGTTTCGATTTGGGGGTGCTGAAGAACTCGAATTCATGCTTCGATGAATGTTCTAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGCTGAGGTTGGGAAGCCTGTTGGAATTGAAATTCCTGAGAACTTCTTATGCCCCATTTCCTTCGAATTGATGATAGATCCCGTCATCGTCTCGACGGGACAGACATATGAGAGATCCAACATACAGAGCTGGATAGACAGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGTTTTGATCCTCACTCCAAATTTTCTTATGAAAAAACTCATCCATGAATGGTGTCAAGAACACAATGTCAAGCTAGAGGAGGGATTAACCAATAGGAAACTTAGGAAGTACAGATCATTAGAAGACGGTTGCCGAAGGACTCTACCGATCAAAACTCTGGTTCGACACCTTTCTCTCGGGTCGGTTCAGGAGCAGAAAGTGGCCGTGACTGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCACAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCTAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCTTACATTTCCGAAGTCCTCAAATTTGGAAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCATTAGCTGATGAGAACAAGGCGATAATCGGGGCTTCAGGCGTGATCCCGAACCTGCTGGAAATCCTCGAGATTGGGAGCTTGAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTCAGGGCTGGCATAGTCAAACCATTGCTGAAAATGCTCTCTGACTCAAATGGCTCCTTGGTTGATGAAGCTCTCTATATAATGTCGGTTCTTTGCGGCCATCCCGAGGCAAAGGCTGCAATGGCGAATGCGAATTTGCTGCTCGTTTTGACCGACGTTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAGTGGTTAACGAGGCTTGGCGCAGCAGTACCATTGATGAAACTAGCCGATACCGGCACGAGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAGCAACTCAGGAAATCATGA | 3270 | 47.65 | MAFRSRFILKNRRHFHTVPPEMSLQLSHPLPIFPRRNGFRTKSQPPVPQSIVSCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMQNVLYVEGYALDRFAEGSWALKPVHQNRIGLVLDAGIEEELRIRHLQVADAARASLGLPVMEYVVTETPLMVEKWIDPKTGQSTGRIRHSVSLLRAVQTLMNQSKVNAVAVVGRFPDDGVEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTSLYQSLSPKSAAEELGYTFLPCVLSGLSNAPQYLSESSELLGKDCILANDVDSVILPIDACGGDGALAFARSKQYKPLIIAVEENETVLSVSPDSLGIEAVKVSNYWEAIGVIAAHKAGIDPYSLRRNRVNNIKCITASSPNGYVVSSASQQFTYVAMSSHDDDGRRRALALQLLDLVRDFVLMSGRSIAGSGDVMKKDCTDLIRRIALLIHLAEEITNFRGGGGGDDNFEELNESGFSSSSSSLDCLSEVVGAIQAAKRLLYAALTFSGMDDHDDDDACATSTDGATKKLVLQFQYVTTRLETALSNLPYHHFCVSDEVQEQVDLVRAQLRRASNKYESMSKPADRKLQSRGSVKWMVNNDVKSMSSVEDSDAESHHRPRSCDDRTSFDLGVLKNSNSCFDECSSVVHSDMEDVLASKSQAEVGKPVGIEIPENFLCPISFELMIDPVIVSTGQTYERSNIQSWIDRGNTTCPKTQEQLQVLILTPNFLMKKLIHEWCQEHNVKLEEGLTNRKLRKYRSLEDGCRRTLPIKTLVRHLSLGSVQEQKVAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDVLTQENAISCILNLSLHEQNKRLVMLSGAVSYISEVLKFGSMEGRECAAATIYSLSLADENKAIIGASGVIPNLLEILEIGSLRGQKDAAGALLNLCMYQGNKGRAFRAGIVKPLLKMLSDSNGSLVDEALYIMSVLCGHPEAKAAMANANLLLVLTDVLKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGAAVPLMKLADTGTRRARRKAASLLEQLRKS | 1089 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19512702 | 19549423 | + | Tan0010654.1 | Tan11g1796 | 768733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1796 | 1089 | Pfam | Armadillo/beta-catenin-like repeat | 925 | 963 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | Pfam | Armadillo/beta-catenin-like repeat | 842 | 881 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | ProSiteProfiles | U-box domain profile. | 713 | 787 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan11g1796 | 1089 | SMART | Ubox_2 | 717 | 780 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan11g1796 | 1089 | Pfam | Protein of unknown function (DUF3326) | 69 | 408 | IPR021763 | - | |
Tan11g1796 | 1089 | Pfam | U-box domain | 714 | 785 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan11g1796 | 1089 | SMART | arm_5 | 883 | 923 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | SMART | arm_5 | 924 | 964 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | SMART | arm_5 | 1006 | 1046 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | SMART | arm_5 | 965 | 1005 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | SMART | arm_5 | 842 | 882 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 853 | 895 | IPR000225 | GO:0005515(InterPro) | |
Tan11g1796 | 1089 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 697 | 796 | IPR013083 | - | |
Tan11g1796 | 1089 | SUPERFAMILY | RING/U-box | 711 | 787 | - | - | |
Tan11g1796 | 1089 | Gene3D | - | 929 | 1089 | IPR011989 | - | |
Tan11g1796 | 1089 | Coils | Coil | 599 | 619 | - | - | |
Tan11g1796 | 1089 | CDD | RING-Ubox_PUB | 715 | 767 | IPR045210 | - | |
Tan11g1796 | 1089 | FunFam | RING-type E3 ubiquitin transferase | 800 | 1089 | - | - | |
Tan11g1796 | 1089 | Gene3D | - | 812 | 928 | IPR011989 | - | |
Tan11g1796 | 1089 | PANTHER | OS01G0127400 PROTEIN | 42 | 432 | IPR021763 | - | |
Tan11g1796 | 1089 | SUPERFAMILY | ARM repeat | 813 | 1086 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g2026 | Tan-Chr5:70391221 | Tan11g1796 | Tan-Chr11:19512702 | 3.00E-37 | dispersed | |
Tan06g1828 | Tan-Chr6:43781369 | Tan11g1796 | Tan-Chr11:19512702 | 2.90E-98 | dispersed | |
Tan09g2201 | Tan-Chr9:72023648 | Tan11g1796 | Tan-Chr11:19512702 | 5.00E-11 | dispersed | |
Tan11g0293 | Tan-Chr11:2314913 | Tan11g1796 | Tan-Chr11:19512702 | 2.50E-39 | dispersed | |
Tan11g1796 | Tan-Chr11:19512702 | Tan04g1579 | Tan-Chr4:25117845 | 2.00E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1796 | - | - | - | 0.0 |