Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1796 ATGGCGTTCCGATCCCGATTCATTCTGAAAAATCGGCGGCATTTTCATACGGTACCGCCAGAAATGTCCCTTCAACTCAGTCATCCACTCCCAATATTCCCCCGCCGGAACGGATTCCGGACCAAATCTCAGCCACCGGTGCCGCAGTCGATCGTCTCCTGCTCCGCCATCAACCGATACTCCGCCGGATGTAAACGGCAGTATACGAGTGTGATGATAGTCCCGACGGGCGTAGGCGCCGCCATTGGTGGATATGCAGGCGATGCTCTGCCGGTTGCTCGCGCTCTCGCCTCCGTCGTTGATTGCCTTATCACTCACCCTAACGTGCTTAATGCAGCAATGCTTTACTGGCCGATGCAAAATGTGCTTTATGTTGAAGGCTATGCACTCGATCGGTTTGCAGAAGGTTCATGGGCCCTAAAACCTGTTCATCAGAATCGGATAGGATTGGTTCTTGATGCTGGAATTGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAATATGTTGTCACAGAGACACCTTTAATGGTAGAGAAGTGGATCGATCCAAAAACTGGGCAATCAACTGGGAGGATTAGACACTCTGTCTCACTGCTGAGAGCCGTGCAGACATTAATGAACCAGTCAAAGGTGAATGCAGTTGCGGTTGTTGGACGATTCCCAGACGATGGTGTTGAAGAGACAGATAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAATTTCAGATCCCATGTGCTCATGCGCCTGCTTTATCACCAACTTCCTTATACCAATCTCTATCTCCAAAATCAGCAGCTGAGGAGTTAGGATACACGTTCTTACCATGTGTACTTTCTGGGCTAAGCAATGCGCCTCAATACTTGAGCGAGAGTTCTGAATTATTAGGGAAGGACTGCATATTGGCAAATGATGTTGATAGTGTCATTCTACCTATAGATGCTTGTGGAGGTGATGGCGCTCTTGCTTTTGCCAGAAGCAAACAGTACAAGCCACTTATTATTGCGGTGGAGGAAAATGAAACAGTTCTCAGCGTTTCTCCAGACTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTATTGCAGCTCACAAGGCAGGAATAGACCCCTATTCCCTGCGAAGAAATAGAGTCAACAACATTAAGTGCATTACCGCTTCATCTCCCAATGGTTACGTAGTTTCAAGTGCCTCTCAACAGTTCACGTACGTGGCAATGAGCAGCCACGACGACGACGGCCGGCGCCGTGCCTTAGCACTGCAACTTCTTGATCTTGTACGTGACTTTGTACTGATGTCAGGAAGGTCCATCGCCGGCTCTGGAGATGTCATGAAAAAGGATTGCACTGATCTCATCCGTCGGATTGCTCTCCTGATTCATCTGGCGGAGGAGATCACTAACTTCCGTGGTGGTGGCGGTGGCGACGACAATTTTGAGGAATTGAATGAGTCTGGTTTTTCTTCTTCTTCGTCTTCCTTGGATTGCCTTTCGGAGGTGGTCGGAGCAATTCAGGCGGCGAAGCGCCTTCTGTATGCCGCTTTGACTTTCTCTGGTATGGACGACCACGACGATGACGACGCTTGTGCGACTTCGACTGATGGAGCTACCAAAAAATTGGTTCTACAATTTCAGTACGTGACAACCAGATTGGAAACTGCACTCTCAAATTTGCCATACCATCACTTTTGTGTCTCAGATGAAGTTCAGGAACAGGTTGATTTGGTTAGAGCTCAGTTGAGGAGAGCATCAAATAAGTATGAATCTATGTCTAAACCTGCAGACAGGAAGCTTCAATCTCGAGGTTCTGTAAAATGGATGGTCAACAATGATGTCAAGAGCATGTCTAGTGTTGAAGATTCAGATGCAGAGTCTCACCACCGTCCCCGGAGCTGCGATGATCGGACGAGTTTCGATTTGGGGGTGCTGAAGAACTCGAATTCATGCTTCGATGAATGTTCTAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGCTGAGGTTGGGAAGCCTGTTGGAATTGAAATTCCTGAGAACTTCTTATGCCCCATTTCCTTCGAATTGATGATAGATCCCGTCATCGTCTCGACGGGACAGACATATGAGAGATCCAACATACAGAGCTGGATAGACAGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGTTTTGATCCTCACTCCAAATTTTCTTATGAAAAAACTCATCCATGAATGGTGTCAAGAACACAATGTCAAGCTAGAGGAGGGATTAACCAATAGGAAACTTAGGAAGTACAGATCATTAGAAGACGGTTGCCGAAGGACTCTACCGATCAAAACTCTGGTTCGACACCTTTCTCTCGGGTCGGTTCAGGAGCAGAAAGTGGCCGTGACTGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCACAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCTAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCTTACATTTCCGAAGTCCTCAAATTTGGAAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCATTAGCTGATGAGAACAAGGCGATAATCGGGGCTTCAGGCGTGATCCCGAACCTGCTGGAAATCCTCGAGATTGGGAGCTTGAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTCAGGGCTGGCATAGTCAAACCATTGCTGAAAATGCTCTCTGACTCAAATGGCTCCTTGGTTGATGAAGCTCTCTATATAATGTCGGTTCTTTGCGGCCATCCCGAGGCAAAGGCTGCAATGGCGAATGCGAATTTGCTGCTCGTTTTGACCGACGTTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAGTGGTTAACGAGGCTTGGCGCAGCAGTACCATTGATGAAACTAGCCGATACCGGCACGAGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAGCAACTCAGGAAATCATGA 3270 47.65 MAFRSRFILKNRRHFHTVPPEMSLQLSHPLPIFPRRNGFRTKSQPPVPQSIVSCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMQNVLYVEGYALDRFAEGSWALKPVHQNRIGLVLDAGIEEELRIRHLQVADAARASLGLPVMEYVVTETPLMVEKWIDPKTGQSTGRIRHSVSLLRAVQTLMNQSKVNAVAVVGRFPDDGVEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTSLYQSLSPKSAAEELGYTFLPCVLSGLSNAPQYLSESSELLGKDCILANDVDSVILPIDACGGDGALAFARSKQYKPLIIAVEENETVLSVSPDSLGIEAVKVSNYWEAIGVIAAHKAGIDPYSLRRNRVNNIKCITASSPNGYVVSSASQQFTYVAMSSHDDDGRRRALALQLLDLVRDFVLMSGRSIAGSGDVMKKDCTDLIRRIALLIHLAEEITNFRGGGGGDDNFEELNESGFSSSSSSLDCLSEVVGAIQAAKRLLYAALTFSGMDDHDDDDACATSTDGATKKLVLQFQYVTTRLETALSNLPYHHFCVSDEVQEQVDLVRAQLRRASNKYESMSKPADRKLQSRGSVKWMVNNDVKSMSSVEDSDAESHHRPRSCDDRTSFDLGVLKNSNSCFDECSSVVHSDMEDVLASKSQAEVGKPVGIEIPENFLCPISFELMIDPVIVSTGQTYERSNIQSWIDRGNTTCPKTQEQLQVLILTPNFLMKKLIHEWCQEHNVKLEEGLTNRKLRKYRSLEDGCRRTLPIKTLVRHLSLGSVQEQKVAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDVLTQENAISCILNLSLHEQNKRLVMLSGAVSYISEVLKFGSMEGRECAAATIYSLSLADENKAIIGASGVIPNLLEILEIGSLRGQKDAAGALLNLCMYQGNKGRAFRAGIVKPLLKMLSDSNGSLVDEALYIMSVLCGHPEAKAAMANANLLLVLTDVLKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGAAVPLMKLADTGTRRARRKAASLLEQLRKS 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19512702 19549423 + Tan0010654.1 Tan11g1796 768733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1796 1089 Pfam Armadillo/beta-catenin-like repeat 925 963 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 Pfam Armadillo/beta-catenin-like repeat 842 881 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 ProSiteProfiles U-box domain profile. 713 787 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g1796 1089 SMART Ubox_2 717 780 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g1796 1089 Pfam Protein of unknown function (DUF3326) 69 408 IPR021763 -
Tan11g1796 1089 Pfam U-box domain 714 785 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan11g1796 1089 SMART arm_5 883 923 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 SMART arm_5 924 964 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 SMART arm_5 1006 1046 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 SMART arm_5 965 1005 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 SMART arm_5 842 882 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 853 895 IPR000225 GO:0005515(InterPro)
Tan11g1796 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 796 IPR013083 -
Tan11g1796 1089 SUPERFAMILY RING/U-box 711 787 - -
Tan11g1796 1089 Gene3D - 929 1089 IPR011989 -
Tan11g1796 1089 Coils Coil 599 619 - -
Tan11g1796 1089 CDD RING-Ubox_PUB 715 767 IPR045210 -
Tan11g1796 1089 FunFam RING-type E3 ubiquitin transferase 800 1089 - -
Tan11g1796 1089 Gene3D - 812 928 IPR011989 -
Tan11g1796 1089 PANTHER OS01G0127400 PROTEIN 42 432 IPR021763 -
Tan11g1796 1089 SUPERFAMILY ARM repeat 813 1086 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2026 Tan-Chr5:70391221 Tan11g1796 Tan-Chr11:19512702 3.00E-37 dispersed
Tan06g1828 Tan-Chr6:43781369 Tan11g1796 Tan-Chr11:19512702 2.90E-98 dispersed
Tan09g2201 Tan-Chr9:72023648 Tan11g1796 Tan-Chr11:19512702 5.00E-11 dispersed
Tan11g0293 Tan-Chr11:2314913 Tan11g1796 Tan-Chr11:19512702 2.50E-39 dispersed
Tan11g1796 Tan-Chr11:19512702 Tan04g1579 Tan-Chr4:25117845 2.00E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1796 - - - 0.0