Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1807 | ATGGCGGTTTTACCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATTCCCGGCTTTGCTTCTTCGTCCCCGTCTCGTCCTCTCTTTATGAGAGAATTGGACATGAACCGGTTACCGGAGGCGGGAGCGGCGGAGGAAGAATGGGCGGTGGCACCGAGTGCGGAGGAGGAGGAAGAAGAGAGCTGCATTAATGGATGTAAGCCAAGGAAGAAGCTTCGTCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAACCATACGTTAAACCATAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAACCAAGGCAAGTTGAAGTATGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGGCTGCGGCGGGAACTAGAGGAGCTGAGGGCCATGAAGGTTGCTCCGCCCTCCGTCGCCTCACCCCACGGCCGACAGCCGCTTGTCCCGGCATCCACTATAACCATGTGTCCCCGATGTGAGCGCGTGACTGCAGCCACTCTAACATCTAGTAAGGCTACAGCCACTGCAATCGCAGCCACTGCAATCGCTACCGTCACCATCGGCGCTGCCTCTGCAATGCCATCGAAAGCGGTTCGGTCCGCCCTCGAATTGCAGCAGCCGTCGAGAGCTTGCTGA | 720 | 53.75 | MAVLPINSSNLDLSISIPGFASSSPSRPLFMRELDMNRLPEAGAAEEEWAVAPSAEEEEEESCINGCKPRKKLRLSKDQSRLLEESFRLNHTLNHKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLRRELEELRAMKVAPPSVASPHGRQPLVPASTITMCPRCERVTAATLTSSKATATAIAATAIATVTIGAASAMPSKAVRSALELQQPSRAC | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20164424 | 20168474 | - | Tan0008892.1 | Tan11g1807 | 768744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1807 | 239 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 54 | 202 | IPR050762 | - | |
Tan11g1807 | 239 | ProSitePatterns | 'Homeobox' domain signature. | 101 | 124 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Tan11g1807 | 239 | Pfam | Homeobox associated leucine zipper | 126 | 160 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan11g1807 | 239 | Gene3D | - | 65 | 133 | - | - | |
Tan11g1807 | 239 | CDD | homeodomain | 69 | 127 | IPR001356 | GO:0003677(InterPro) | |
Tan11g1807 | 239 | SMART | halz | 126 | 169 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan11g1807 | 239 | SUPERFAMILY | Homeodomain-like | 62 | 127 | IPR009057 | - | |
Tan11g1807 | 239 | Pfam | Homeodomain | 70 | 124 | IPR001356 | GO:0003677(InterPro) | |
Tan11g1807 | 239 | ProSiteProfiles | 'Homeobox' domain profile. | 66 | 126 | IPR001356 | GO:0003677(InterPro) | |
Tan11g1807 | 239 | FunFam | Homeobox-leucine zipper protein 18 | 54 | 131 | - | - | |
Tan11g1807 | 239 | Coils | Coil | 139 | 162 | - | - | |
Tan11g1807 | 239 | SMART | HOX_1 | 68 | 130 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1613 | Tan-Chr4:28785786 | Tan11g1807 | Tan-Chr11:20164424 | 3.70E-65 | dispersed | |
Tan06g0528 | Tan-Chr6:4040918 | Tan11g1807 | Tan-Chr11:20164424 | 1.70E-33 | dispersed | |
Tan10g0059 | Tan-Chr10:933680 | Tan11g1807 | Tan-Chr11:20164424 | 7.70E-35 | dispersed | |
Tan10g1877 | Tan-Chr10:59614868 | Tan11g1807 | Tan-Chr11:20164424 | 3.00E-15 | dispersed | |
Tan11g0610 | Tan-Chr11:5408743 | Tan11g1807 | Tan-Chr11:20164424 | 1.50E-08 | dispersed | |
Tan11g1807 | Tan-Chr11:20164424 | Tan03g1718 | Tan-Chr3:73128639 | 6.30E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28777 | PF00046 | Homeodomain | 9.00E-17 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1807 | K09338 | - | csv:101206325 | 271.937 |