Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1826 ATGCACAAGAACACCACATCTGCGTCGAACACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTTGCTCCAAAGCAATCCGTGCCGGTCTCTCTTCCATTGACTCTCTATGGCGACTCGACACACGCGGATTCAATCTCCTCGTCAAAATCTGTAAGCAACCACCTCTATCAAACCCGCGTAGTTCAAGATCACCAGGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTCCGAAGTATTAACCACGAGCTTAGCAAACACCTGAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCTTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTCGCGGAGAAGGGATCAAGCAGTTCGGCATGGGAAGATGTTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTTAGGTCCAATGGATACTTGAAGATGGCTCAAGGCGGCACCAGCCAGGGCGGAAAGGTTCGCGCCTCATCTCGTCCCAGAACTGCGAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTGGAGGTTTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAGGAAACGGGCAGCTGCCCATATGGAGACCACTGCCAATTCGCCCACGGCATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCGTACGGTCACCGCTGCCACTTCCGCCATGCACTAACTGACCAGGAAAGGCTCATGGGTCCACTGAAGCCCACTTGCAGAACCACCCCCAAGCTCGACAGGTGA 1047 53.87 MHKNTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSISSSKSVSNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQALPFNFVEGFRGLSVAEKGSSSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTTPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21065258 21068478 - Tan0015344.1 Tan11g1826 768763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1826 348 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872(InterPro)
Tan11g1826 348 Coils Coil 100 120 - -
Tan11g1826 348 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872(InterPro)
Tan11g1826 348 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872(InterPro)
Tan11g1826 348 FunFam zinc finger CCCH domain-containing protein 15-like 255 294 - -
Tan11g1826 348 FunFam Zinc finger protein 36, C3H1 type-like 1 295 331 - -
Tan11g1826 348 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872(InterPro)
Tan11g1826 348 Gene3D - 255 294 - -
Tan11g1826 348 Gene3D - 295 331 - -
Tan11g1826 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 65 327 IPR045877 GO:0003729(InterPro)
Tan11g1826 348 SMART c3hfinal6 261 288 IPR000571 GO:0046872(InterPro)
Tan11g1826 348 SMART c3hfinal6 299 326 IPR000571 GO:0046872(InterPro)
Tan11g1826 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g0118 Tan-Chr11:1197279 Tan11g1826 Tan-Chr11:21065258 2.30E-37 dispersed
Tan11g0119 Tan-Chr11:1197279 Tan11g1826 Tan-Chr11:21065258 2.30E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28778 PF00642 zf-CCCH 5.40E-12 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1826 K18753 - csv:101203274 623.624