Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1826 | ATGCACAAGAACACCACATCTGCGTCGAACACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTTGCTCCAAAGCAATCCGTGCCGGTCTCTCTTCCATTGACTCTCTATGGCGACTCGACACACGCGGATTCAATCTCCTCGTCAAAATCTGTAAGCAACCACCTCTATCAAACCCGCGTAGTTCAAGATCACCAGGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTCCGAAGTATTAACCACGAGCTTAGCAAACACCTGAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCTTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTCGCGGAGAAGGGATCAAGCAGTTCGGCATGGGAAGATGTTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTTAGGTCCAATGGATACTTGAAGATGGCTCAAGGCGGCACCAGCCAGGGCGGAAAGGTTCGCGCCTCATCTCGTCCCAGAACTGCGAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTGGAGGTTTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAGGAAACGGGCAGCTGCCCATATGGAGACCACTGCCAATTCGCCCACGGCATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCGTACGGTCACCGCTGCCACTTCCGCCATGCACTAACTGACCAGGAAAGGCTCATGGGTCCACTGAAGCCCACTTGCAGAACCACCCCCAAGCTCGACAGGTGA | 1047 | 53.87 | MHKNTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSISSSKSVSNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQALPFNFVEGFRGLSVAEKGSSSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTTPKLDR | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21065258 | 21068478 | - | Tan0015344.1 | Tan11g1826 | 768763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1826 | 348 | ProSiteProfiles | Zinc finger C3H1-type profile. | 299 | 327 | IPR000571 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | Coils | Coil | 100 | 120 | - | - | |
Tan11g1826 | 348 | ProSiteProfiles | Zinc finger C3H1-type profile. | 261 | 289 | IPR000571 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | SUPERFAMILY | CCCH zinc finger | 258 | 293 | IPR036855 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | FunFam | zinc finger CCCH domain-containing protein 15-like | 255 | 294 | - | - | |
Tan11g1826 | 348 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 295 | 331 | - | - | |
Tan11g1826 | 348 | SUPERFAMILY | CCCH zinc finger | 295 | 329 | IPR036855 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | Gene3D | - | 255 | 294 | - | - | |
Tan11g1826 | 348 | Gene3D | - | 295 | 331 | - | - | |
Tan11g1826 | 348 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 65 | 327 | IPR045877 | GO:0003729(InterPro) | |
Tan11g1826 | 348 | SMART | c3hfinal6 | 261 | 288 | IPR000571 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | SMART | c3hfinal6 | 299 | 326 | IPR000571 | GO:0046872(InterPro) | |
Tan11g1826 | 348 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 262 | 287 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan11g0118 | Tan-Chr11:1197279 | Tan11g1826 | Tan-Chr11:21065258 | 2.30E-37 | dispersed | |
Tan11g0119 | Tan-Chr11:1197279 | Tan11g1826 | Tan-Chr11:21065258 | 2.30E-37 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28778 | PF00642 | zf-CCCH | 5.40E-12 | CL0537 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1826 | K18753 | - | csv:101203274 | 623.624 |