Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1867 ATGATTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCACTCTCTCCGATTTCTCCGACACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTTCCTCTCTGTTTAGAGCTCGTTACCTATGCCATTGATTGTTGTAGGCAGCAGCTCTCGGAGACGACCACGGAGAATCGTCAATCGGAGTGTTCAGAGCAGACTTCCAGTGAGATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAGCAACAGCAGTCTCGTGAAACTCAAACGGAGAAGAATGACGACTCCGATCGAAACAATTTGAATTTGTTTCCGTCGGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCTCTGCATCAGGACTTGCCGGAGAAGACGGCCGTTGTTGAGGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAACCCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCGGCTCCGGCTCCGGCGGCGGCGACGAGCTCGACGGCGGAGACCGGGTCCGACGGAAGCAATCGACGGGAAGAGAAAGAAGCGCAGAATCAAAGGAAACAGAGAAGGTGCTGGTCGCCGGAGTTGCACCGGCGATTCCTTCATGCGCTTCAACAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATCAGAGAATTGATGAAGGTCGATGGTCTTACCAACGACGAAGTGAAAAGTCATTTACAGAAATATCGTCTACACACGAGACGGCCAAGTCCGACGATGCACAACAACGACAGCGCCCAGGCGCCGCAGTTCCTGGTGGTGGGCGGCATATGGGTACCGGCGGCCGAGTACGCCACCACTTCCTCCGGTGAAGCAGTCAGCGCAGCCACCACTAACGGAATTTACGCACCGGTGGTTGCGGCGGCGGCGCCGCAGCCATTACTCAGTTCAGTCCAAAAGCCGAAGCCGAAGCCGAAGCCCAAGGTTGCTTCCGCCGATTGTATTTCTCCTAGTACATCTTCCTCCACTCATACGTCTTCAGTTTCACCTCCCTCTTGA 1098 53.92 MIYSDKMQEIASKMGFTLSDFSDTLEQERRKVLMFQRELPLCLELVTYAIDCCRQQLSETTTENRQSECSEQTSSEMGPVLEEFIPINRNGVSDFEQQQSRETQTEKNDDSDRNNLNLFPSDWLRSAQLWNQTSDPPPLHQDLPEKTAVVEVKRNGGAFRPFQKEKPGGGGGGTSSSSAPAPAAATSSTAETGSDGSNRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTMHNNDSAQAPQFLVVGGIWVPAAEYATTSSGEAVSAATTNGIYAPVVAAAAPQPLLSSVQKPKPKPKPKVASADCISPSTSSSTHTSSVSPPS 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24114385 24117404 + Tan0020598.1 Tan11g1867 768804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1867 365 MobiDBLite consensus disorder prediction 329 365 - -
Tan11g1867 365 FunFam Myb family transcription factor 209 267 - -
Tan11g1867 365 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Tan11g1867 365 MobiDBLite consensus disorder prediction 60 77 - -
Tan11g1867 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677(InterPro)
Tan11g1867 365 MobiDBLite consensus disorder prediction 170 194 - -
Tan11g1867 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Tan11g1867 365 MobiDBLite consensus disorder prediction 158 214 - -
Tan11g1867 365 MobiDBLite consensus disorder prediction 94 118 - -
Tan11g1867 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 325 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1867 365 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Tan11g1867 365 Gene3D - 209 267 - -
Tan11g1867 365 MobiDBLite consensus disorder prediction 346 365 - -
Tan11g1867 365 MobiDBLite consensus disorder prediction 195 214 - -
Tan11g1867 365 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1867 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0199 Tan-Chr8:1793984 Tan11g1867 Tan-Chr11:24114385 1.10E-41 dispersed
Tan09g1338 Tan-Chr9:65679477 Tan11g1867 Tan-Chr11:24114385 3.40E-40 dispersed
Tan10g1521 Tan-Chr10:23426252 Tan11g1867 Tan-Chr11:24114385 6.10E-11 dispersed
Tan11g1867 Tan-Chr11:24114385 Tan04g0896 Tan-Chr4:7666739 1.80E-65 wgd
Tan11g1867 Tan-Chr11:24114385 Tan08g1295 Tan-Chr8:45121274 2.80E-10 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28783 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Tan TF