Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1872 ATGAGGTTGAAGAGGCTGGCTCCGCCGCAGACGGCGGCAGTGACGGTGGCGGCTGCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAGGGAGCTGTTCATGGAGCTCTCATGGCGGTGGACTCCATGGAACAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGGCTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTACGCAGCTAGAGCAGGAGCTACATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCTGGGGCAGGAGACCATTGTTTATCCATGACAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGGACGGTGGCTTGACGAGCATCAACGACTGATCAATGATTTGAGAGCATCTACAAATTCTCAGCTGGGCGATGACGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTAAAGAGCGTAGGCGCTAAGGCCGACGTTTTCCACATTCTTTCTGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAACTTCTAAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAGTCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCTGCTAGTTCGGGAAATGTCGCCGATTACATGGGCCAAATGGCGATCGCAATGAGCAAGCTAACGACGCTCGAGAACTTCCTCCATCAGGCTGATCTTCTGAGGCAGCAAACGCTACAACAGATGCATCGGATATTAACTACTCGCCAAGCTGCACGAGCGCTTCTTGTCATCAGCGATTACGTTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCAAAAGACTGA 1101 49.95 MRLKRLAPPQTAAVTVAAASSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAVHGALMAVDSMEQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLTQLEQELHRARQQGIFVASGAGDHCLSMTGNGALAFDLDYGRWLDEHQRLINDLRASTNSQLGDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYVSRLRALSSLWLARPKD 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24285573 24289047 + Tan0002664.2 Tan11g1872 768809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1872 366 Gene3D - 80 129 - -
Tan11g1872 366 ProSiteProfiles DOG1 domain profile. 147 363 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan11g1872 366 SUPERFAMILY Leucine zipper domain 81 124 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1872 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1872 366 FunFam BZIP family transcription factor 80 129 - -
Tan11g1872 366 SMART brlzneu 77 148 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1872 366 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan11g1872 366 Pfam bZIP transcription factor 80 121 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1872 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1872 366 PANTHER TRANSCRIPTION FACTOR TGA9 38 366 - -
Tan11g1872 366 Coils Coil 100 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1264 Tan-Chr8:41075118 Tan11g1872 Tan-Chr11:24285573 7.60E-95 dispersed
Tan08g1467 Tan-Chr8:60396535 Tan11g1872 Tan-Chr11:24285573 3.30E-94 dispersed
Tan11g1872 Tan-Chr11:24285573 Tan11g1874 Tan-Chr11:24285573 6.90E-182 dispersed
Tan11g1871 Tan-Chr11:24285573 Tan11g1872 Tan-Chr11:24285573 3.20E-200 tandem
Tan11g1872 Tan-Chr11:24285573 Tan11g1873 Tan-Chr11:24285573 6.90E-182 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28785 PF14144 DOG1 9.00E-30 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1872 K14431 - csv:101210308 660.603