Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1873 ATGCAGAGCTTTGAAAACCCAGAACAGCTCTATGCTCATTCTTCTTCTTCTTCCATCTTTCTCCGTGGAGACGACAGTGGGCGAATCCATACGCGGTTTCTTCCGGATATTGAGGAGCTTCAACAATCCGCTGCTGCTATTGCTGCTTTTCATCACGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAACGCAGCTTTTCCCATCCACCTACCGTACGCGAGCACGGATGTGGGTTCAATAGGAACAGGGTATTTAGACACGGGACAGCAATTGATGAGGTTGAAGAGGCTGGCTCCGCCGCAGACGGCGGCAGTGACGGTGGCGGCTGCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAGGGAGCTGTTCATGGAGCTCTCATGGCGGTGGACTCCATGGAACAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGGCTGAGGAAGAAAGGCATTTTTGTGGCTTCTGGGGCAGGAGACCATTGTTTATCCATGACAGGAAATGGTGCCTTGGCATTTGATCTCGACTATGGACGGTGGCTTGACGAGCATCAACGACTGATCAATGATTTGAGAGCATCTACAAATTCTCAGCTGGGCGATGACGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTAAAGAGCGTAGGCGCTAAGGCCGACGTTTTCCACATTCTTTCTGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAACTTCTAAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTTTGCAACAGTCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCTGCTAGTTCGGGAAATGTCGCCGATTACATGGGCCAAATGGCGATCGCAATGAGCAAGCTAACGACGCTCGAGAACTTCCTCCATCAGGCTGATCTTCTGAGGCAGCAAACGCTACAACAGATGCATCGGATATTAACTACTCGCCAAGCTGCACGAGCGCTTCTTGTCATCAGCGATTACGTTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGACCAAAAGACTGA 1320 49.17 MQSFENPEQLYAHSSSSSIFLRGDDSGRIHTRFLPDIEELQQSAAAIAAFHHDDAVDLSPSSVFSLKSTHNAAFPIHLPYASTDVGSIGTGYLDTGQQLMRLKRLAPPQTAAVTVAAASSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAVHGALMAVDSMEQSKPKSADQKTLRRLAQNREAARKSRLRKKGIFVASGAGDHCLSMTGNGALAFDLDYGRWLDEHQRLINDLRASTNSQLGDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYVSRLRALSSLWLARPKD 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24285573 24289047 + Tan0002664.3 Tan11g1873 768810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1873 439 ProSiteProfiles DOG1 domain profile. 220 436 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan11g1873 439 MobiDBLite consensus disorder prediction 127 144 - -
Tan11g1873 439 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1873 439 PANTHER TRANSCRIPTION FACTOR TGA9 136 201 - -
Tan11g1873 439 MobiDBLite consensus disorder prediction 127 148 - -
Tan11g1873 439 Pfam Seed dormancy control 238 311 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1871 Tan-Chr11:24285573 Tan11g1873 Tan-Chr11:24285573 4.90E-241 dispersed
Tan11g1872 Tan-Chr11:24285573 Tan11g1873 Tan-Chr11:24285573 6.90E-182 tandem
Tan11g1873 Tan-Chr11:24285573 Tan11g1874 Tan-Chr11:24285573 6.50E-187 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1873 K14431 - csv:101210308 766.533