Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1888 ATGGAGAGGTTGTCGGCGGTGGCTTCAGCTGTTTCTTCACTGCCGGAGAGGACGACGATGGCGGCGTGTGGGTTTGTGAGCTGGTATGAGGTTTTCGTTTCCAGTGACAAAGGGAGAAGAGAGGTTCATTATTACCTGAAGCGCGGCGATGGGAGCTCAGATCTGGCCGTCGTGGGGAAGGAGAAGAGCTTGAGGCATATGTCTTATCACTATGCTTTGCAGAATCGATTCCTTAATTCGGTGGGGCTGTTTTCGTCGCTCACGAAGCTCAAGTCTCGCAGAGAGGTCGTTGAGTGGCTAAGCTCTGTTGTTTCTGATTCCCAGTGTAAAACATCCCAACCATCTGATGATCGTGTGGACAGAGAAGGTGCCGATGCATACCCATCGGATATTGGGCCTGTAAAGGATGTTCAACAGATAAAATTAGGTCAGAATACCAGGGAATTTTCATGGATAGGATGTCCTTGGACATGTAAGCGCAAGCGCAGGCACTATCCATCTTTCAGTCGGAATGGTGTTAAGATCTCGGTTCATGACTTTGTATACGTCTTGGCTGAGGAAGGCAAGCATCTTGTTGCATACTTGGAGGATTTGTATGAGGACTCTAGAAGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAGTTGATGAGGTTGATATTGATTTGCCACACAATTTTAATGACAGAGAGATTTTCTTTTCTCTTTGTCTTCAAGATCTCAGTATTGAATGCATAGATGGCTTGGCGACTGTTCTTAGTCCCCACCATTTTCAGAAGTTCCAGAAAGAAGCAAAAAATACTCGATTGGAGCCATATGTATGTGAGAAGCAATTCGATAATGATGATGTCAAACCCTTTGATATTACACAGGTCAAAGGCTATTGGAAGCAAGAGATACTCAGATACATGTTTGCTCATTCTTCTTCAAAAGCTCTAGGCCACTCTCAGCACTCGGAAGATGACATAAGTGCTGAGATGAGACCTCGAAAGAGGCATCGGCTATCGAAAAATAATGGTGACTTGCAGAATAATGAGAAGAGACAGCCGGTTAATGTGTCTTCTTCTCTCGACGTGTGCAGTTCAGGCAACAACTTGGTTGATTTTAAAAGCAGTGGTGTTATTTTCAGTCCAAAAGGTGGCTGCGCATCTAAAACTTTTATGGGCAAAGATTTGAAGAACAATTCTTCTTCAGGTCAGTTAACTGTAGGATCGGAGATTGAAGTTCTCTCAGAAGATAGTGGCATTAGAGGGTGTTGGTTCAGAGCTTCAATAATCAAGAAGAACAGAGACAAGGTCAAGGTGCAATATTGCGATCTTCAGGATGCCGAAGATGAATCAAACAAGCTTGTGGAATGGCTTTCAGCATCTAAAGTTGCAGGTGCTGATCAATTGGGTCTACGCACCGATGGAAGATTAGTTATTCGTCCGGAGCCCGGTAAGGGTAGCAAAGTTTCCTTCGTTTACAACGTTGGGACAATTGTTGACGTATGGTGGCACGACGGTTGGTGGGAAGGAATTGTAGTTCAGAAGGAATTTGAAAACAAGTTGCGAGTTTACTTACCAGGTGAAAAGCAAGAATTGGTTTTTGGCCCAGAAGACTTGAGGCATTCTCAAGAATGGTTAGGAAATCGGTGGATGCATATGCAGGAAAGACCAGATGTTGCAACCTCCATTTTGTCTCGAGTTGCAGATGAGAGCTTCCCCGATAAGGCACCTTCCAATGGCAAGTCGACCCACATTGCCATTTGTGATAGCACAACACCACGGGAAGACCGAAGTCAATCAAGCGAACCTCGATCAAATGCCAACACCAAAAAAACCAAAGAATCATTATGCACGGTTCCAGATCTCTCCAAGGATGGTTTGCTCACCAAATTGCGGTGGACACGATCGAAAAAGAGAAGCCAACCCAGCAGCAGCAGCTCATTACCGAAGCACCCGGAGGATCCAAGTAAATCCTCTCCTTCCCCATCTTCTTCTTCGAGTCCTTGTGATAGATTTCTAATTCCAGCCTCCATGAAAGTAGTAGATCATGATAACTGCAAGTACCTTGGAGATTCTCTGTTCACTACATCAGTTGTGCCTCCTCTCTCAAGCTTGGTAATGTCAAGATAA 2118 44.85 MERLSAVASAVSSLPERTTMAACGFVSWYEVFVSSDKGRREVHYYLKRGDGSSDLAVVGKEKSLRHMSYHYALQNRFLNSVGLFSSLTKLKSRREVVEWLSSVVSDSQCKTSQPSDDRVDREGADAYPSDIGPVKDVQQIKLGQNTREFSWIGCPWTCKRKRRHYPSFSRNGVKISVHDFVYVLAEEGKHLVAYLEDLYEDSRSNRMVVVRWFHKVDEVDIDLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPHHFQKFQKEAKNTRLEPYVCEKQFDNDDVKPFDITQVKGYWKQEILRYMFAHSSSKALGHSQHSEDDISAEMRPRKRHRLSKNNGDLQNNEKRQPVNVSSSLDVCSSGNNLVDFKSSGVIFSPKGGCASKTFMGKDLKNNSSSGQLTVGSEIEVLSEDSGIRGCWFRASIIKKNRDKVKVQYCDLQDAEDESNKLVEWLSASKVAGADQLGLRTDGRLVIRPEPGKGSKVSFVYNVGTIVDVWWHDGWWEGIVVQKEFENKLRVYLPGEKQELVFGPEDLRHSQEWLGNRWMHMQERPDVATSILSRVADESFPDKAPSNGKSTHIAICDSTTPREDRSQSSEPRSNANTKKTKESLCTVPDLSKDGLLTKLRWTRSKKRSQPSSSSSLPKHPEDPSKSSPSPSSSSSPCDRFLIPASMKVVDHDNCKYLGDSLFTTSVVPPLSSLVMSR 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24631944 24635951 - Tan0004920.1 Tan11g1888 768825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1888 705 Gene3D - 144 289 IPR043151 -
Tan11g1888 705 MobiDBLite consensus disorder prediction 598 612 - -
Tan11g1888 705 MobiDBLite consensus disorder prediction 314 349 - -
Tan11g1888 705 SMART BAH_4 173 290 IPR001025 GO:0003682(InterPro)
Tan11g1888 705 MobiDBLite consensus disorder prediction 634 667 - -
Tan11g1888 705 MobiDBLite consensus disorder prediction 314 329 - -
Tan11g1888 705 ProSiteProfiles BAH domain profile. 173 290 IPR001025 GO:0003682(InterPro)
Tan11g1888 705 MobiDBLite consensus disorder prediction 567 667 - -
Tan11g1888 705 CDD Tudor_Agenet_AtDUF_rpt1_3 401 459 - -
Tan11g1888 705 SMART agenet_At_2 399 465 IPR014002 -
Tan11g1888 705 SMART agenet_At_2 487 543 IPR014002 -
Tan11g1888 705 Pfam Agenet domain 404 478 IPR008395 -
Tan11g1888 705 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 393 671 - -
Tan11g1888 705 Pfam BAH domain 174 283 IPR001025 GO:0003682(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1888 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3173 Tan-Chr1:85330608 Tan11g1888 Tan-Chr11:24631944 1.90E-92 dispersed
Tan01g3174 Tan-Chr1:85330608 Tan11g1888 Tan-Chr11:24631944 4.60E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g239 . . . . Bpe02g00636 . . Bma01g02077 Cmo04g02490 Cmo15g00672 . . . . Sed11g1620 . . Bhi04g01885 Tan11g1888 Cmetu03g0875 . Hepe02g2232 . . Cla08g00612 Cam08g1026 Cec08g0615 Cco08g0727 Clacu08g0736 . Cre08g0544 . . . Cone20ag0434 . . . Cme03g00522 . . . . . . . . . . . . . . . Cpe01g02064 . . . . . . . . . . . . . . . Lsi08g00452 . Chy03g00768 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44