Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1929 ATGCAAAGTTCAAACTTCACTTGCATATCATCAAGCGAGAGTGCGTGTTTGGAGCCTGATGAAGAAGGAGAAGACTCCATTTTCCTTTCCCTTTGTCCTCCAGGCCAACGCCACTTAATTTCTTCTAAACACCAACAAAACAAACAAAACCCCATTTACCCTAATTCTTCTCTTCAAAACCCTAATATTCTTCTTCATCATCAAGATCATGCTTCTGATGCTGTCACCGTCGCAATGCATATTGGCCCCTCCTCCTCCGCCGCCGCTGAATCCAACGACGTCGCCGCCGTCCGCCCGGTTGACGGCCACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAATAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTAAGACTTCCATGTTATTGCTGTGCAGAGGGCTGCAAGAACAACATAGAACATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCAGTTGTAGGAAATGTGGGAAACCCTTTGCAGTCCGAGGAGATTGGAGGACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAGCACAAAAGATCCCTTAAAGATCATGTTCGAGCCTTTGGGGATGGCCATGCTCCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATCATCATGATCAACACTTTAATGGAGGTCAACCCTGGTCAATTTATCATTAA 873 45.48 MQSSNFTCISSSESACLEPDEEGEDSIFLSLCPPGQRHLISSKHQQNKQNPIYPNSSLQNPNILLHHQDHASDAVTVAMHIGPSSSAAAESNDVAAVRPVDGHYWIPTPAQILVGPTQFSCSVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDHHDQHFNGGQPWSIYH 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29393639 29395226 + Tan0022669.1 Tan11g1929 768866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1929 290 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Tan11g1929 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Tan11g1929 290 SMART c2h2final6 119 141 IPR013087 -
Tan11g1929 290 SMART c2h2final6 167 199 IPR013087 -
Tan11g1929 290 SMART c2h2final6 204 224 IPR013087 -
Tan11g1929 290 Gene3D Classic Zinc Finger 118 141 - -
Tan11g1929 290 Gene3D Classic Zinc Finger 162 251 - -
Tan11g1929 290 SUPERFAMILY beta-beta-alpha zinc fingers 115 141 IPR036236 -
Tan11g1929 290 PANTHER ZINC FINGER PROTEIN WIP2 92 277 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Tan11g1929 290 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 203 227 - -
Tan11g1929 290 SUPERFAMILY beta-beta-alpha zinc fingers 187 224 IPR036236 -
Tan11g1929 290 FunFam Zinc finger protein WIP2 173 255 - -
Tan11g1929 290 Pfam Zinc finger, C2H2 type 119 138 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1211 Tan-Chr8:32551763 Tan11g1929 Tan-Chr11:29393639 1.20E-84 dispersed
Tan08g1447 Tan-Chr8:59219365 Tan11g1929 Tan-Chr11:29393639 2.70E-85 dispersed
Tan11g1929 Tan-Chr11:29393639 Tan04g1769 Tan-Chr4:49292463 8.30E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28788 PF00096 zf-C2H2 0.0066 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1929 - - - 0.0