Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1929 | ATGCAAAGTTCAAACTTCACTTGCATATCATCAAGCGAGAGTGCGTGTTTGGAGCCTGATGAAGAAGGAGAAGACTCCATTTTCCTTTCCCTTTGTCCTCCAGGCCAACGCCACTTAATTTCTTCTAAACACCAACAAAACAAACAAAACCCCATTTACCCTAATTCTTCTCTTCAAAACCCTAATATTCTTCTTCATCATCAAGATCATGCTTCTGATGCTGTCACCGTCGCAATGCATATTGGCCCCTCCTCCTCCGCCGCCGCTGAATCCAACGACGTCGCCGCCGTCCGCCCGGTTGACGGCCACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAATAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCACAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTAAGACTTCCATGTTATTGCTGTGCAGAGGGCTGCAAGAACAACATAGAACATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCAGTTGTAGGAAATGTGGGAAACCCTTTGCAGTCCGAGGAGATTGGAGGACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAGCACAAAAGATCCCTTAAAGATCATGTTCGAGCCTTTGGGGATGGCCATGCTCCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATCATCATGATCAACACTTTAATGGAGGTCAACCCTGGTCAATTTATCATTAA | 873 | 45.48 | MQSSNFTCISSSESACLEPDEEGEDSIFLSLCPPGQRHLISSKHQQNKQNPIYPNSSLQNPNILLHHQDHASDAVTVAMHIGPSSSAAAESNDVAAVRPVDGHYWIPTPAQILVGPTQFSCSVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDHHDQHFNGGQPWSIYH | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29393639 | 29395226 | + | Tan0022669.1 | Tan11g1929 | 768866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1929 | 290 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 121 | 141 | IPR013087 | - | |
Tan11g1929 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 119 | 146 | IPR013087 | - | |
Tan11g1929 | 290 | SMART | c2h2final6 | 119 | 141 | IPR013087 | - | |
Tan11g1929 | 290 | SMART | c2h2final6 | 167 | 199 | IPR013087 | - | |
Tan11g1929 | 290 | SMART | c2h2final6 | 204 | 224 | IPR013087 | - | |
Tan11g1929 | 290 | Gene3D | Classic Zinc Finger | 118 | 141 | - | - | |
Tan11g1929 | 290 | Gene3D | Classic Zinc Finger | 162 | 251 | - | - | |
Tan11g1929 | 290 | SUPERFAMILY | beta-beta-alpha zinc fingers | 115 | 141 | IPR036236 | - | |
Tan11g1929 | 290 | PANTHER | ZINC FINGER PROTEIN WIP2 | 92 | 277 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Tan11g1929 | 290 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 203 | 227 | - | - | |
Tan11g1929 | 290 | SUPERFAMILY | beta-beta-alpha zinc fingers | 187 | 224 | IPR036236 | - | |
Tan11g1929 | 290 | FunFam | Zinc finger protein WIP2 | 173 | 255 | - | - | |
Tan11g1929 | 290 | Pfam | Zinc finger, C2H2 type | 119 | 138 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1211 | Tan-Chr8:32551763 | Tan11g1929 | Tan-Chr11:29393639 | 1.20E-84 | dispersed | |
Tan08g1447 | Tan-Chr8:59219365 | Tan11g1929 | Tan-Chr11:29393639 | 2.70E-85 | dispersed | |
Tan11g1929 | Tan-Chr11:29393639 | Tan04g1769 | Tan-Chr4:49292463 | 8.30E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28788 | PF00096 | zf-C2H2 | 0.0066 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1929 | - | - | - | 0.0 |