Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1931 ATGGAGGCAAGCTCTTTGGACGAAAGTACCGCCAGTGACTCCACTTCTATTTCTCCTGTCACCCCATTACTCTTCAACTCATCTCCTTCGCCGTCGCTTCCGCCGGCCGACGCTGAATCCCGAAAGCTTCCTTCTTCCCGTTTCAAAGGAGTCGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAAAAGCATCAAAGGGTCTGGCTCGGCACATTCAACGAAGAACACGACGCTGCTAAAGCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGTGACGCCGTCACCAACTTCAAACCCGACGCCGCCTCCACCACCGTCGACGCCGCTCTCGAAGCCGACTTTCTCAAATCCCACTCCAAGCTCGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTCCAGCAGAGCAAGCGACACCGCGGTGCCACGGCGACGGCGAATACGGCGGCGGCATCCTCTCTCCACCACTCCGGCTCCGATCGCGGATCGGAGTCGGATCTCCGGGAGGTTCTGTTCGAGAAAACCGTGACGCCGAGCGACGTGGGGAAATTGAACCGGCTGGTGATTCCGAAACAGCACGCGGAGAAAAACTTTCCGTTGGGAGACGGCGTCGTTTCGGTAGCGAAAGGAATGCTTCTAAACTTCGAGGATATGGGAGGGAAAGTATGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACCAAGGGCTGGAGCCGGTTCGTAAAAGAGAAGAGTCTCCGAGCCGGAGATGTCGTCCGCTTCCTCCGCTCGACCGGACCGGATAAACAGCTTTATATTGATGGAAAACCGGCAGGGGTGAACCCGGTTCATGTGGTGAAGCTTTTTGGAGTCAATATTTTGGAACAACCGGTGGGTTGTTGTGGGAAGAGAGAGAGAGAAGGGTTGTTGGATTTACAAGGGACCAAAAAGCAAAGAATAATCAAAGCTTTGTAA 990 55.45 MEASSLDESTASDSTSISPVTPLLFNSSPSPSLPPADAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPDAASTTVDAALEADFLKSHSKLEIVDMLRKHTYNDELQQSKRHRGATATANTAAASSLHHSGSDRGSESDLREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLGDGVVSVAKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGPDKQLYIDGKPAGVNPVHVVKLFGVNILEQPVGCCGKREREGLLDLQGTKKQRIIKAL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29672929 29674620 - Tan0008750.1 Tan11g1931 768868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1931 329 Gene3D - 167 287 IPR015300 -
Tan11g1931 329 ProSiteProfiles B3 DNA-binding domain profile. 179 282 IPR003340 GO:0003677(InterPro)
Tan11g1931 329 SMART B3_2 179 282 IPR003340 GO:0003677(InterPro)
Tan11g1931 329 MobiDBLite consensus disorder prediction 139 172 - -
Tan11g1931 329 CDD AP2 46 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1931 329 MobiDBLite consensus disorder prediction 1 34 - -
Tan11g1931 329 Gene3D AP2/ERF domain 46 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1931 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 46 283 IPR044800 GO:0003700(InterPro)
Tan11g1931 329 Pfam B3 DNA binding domain 179 269 IPR003340 GO:0003677(InterPro)
Tan11g1931 329 MobiDBLite consensus disorder prediction 146 165 - -
Tan11g1931 329 MobiDBLite consensus disorder prediction 1 54 - -
Tan11g1931 329 ProSiteProfiles AP2/ERF domain profile. 47 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1931 329 FunFam AP2 domain-containing protein RAP2.8 46 103 - -
Tan11g1931 329 SMART rav1_2 47 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1931 329 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677(InterPro)
Tan11g1931 329 CDD B3_DNA 178 266 IPR003340 GO:0003677(InterPro)
Tan11g1931 329 SUPERFAMILY DNA-binding pseudobarrel domain 178 272 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0897 Tan-Chr4:7685937 Tan11g1931 Tan-Chr11:29672929 2.70E-106 dispersed
Tan08g1679 Tan-Chr8:67117841 Tan11g1931 Tan-Chr11:29672929 8.20E-34 dispersed
Tan09g0896 Tan-Chr9:60445322 Tan11g1931 Tan-Chr11:29672929 3.20E-45 dispersed
Tan09g1552 Tan-Chr9:67365045 Tan11g1931 Tan-Chr11:29672929 7.40E-45 dispersed
Tan11g1931 Tan-Chr11:29672929 Tan11g1121 Tan-Chr11:8870214 1.10E-10 dispersed
Tan11g1931 Tan-Chr11:29672929 Tan06g1845 Tan-Chr6:44839824 6.70E-35 wgd
Tan11g1931 Tan-Chr11:29672929 Tan08g1184 Tan-Chr8:28966042 1.10E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28789 PF02362 B3 1.70E-26 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1931 K09287 - csv:101206328 459.529