Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan11g1935 | ATGGCTGGTAAAGCTCAAATCCCTACCAAAAGCTCAGCGCTTATTTCTATGATTGCTGATGAGGATACAGTGGTTGGATTTCTTCTTGCTGGAGTTGGTAACGTTGACCTGCGAAGAAAAACTAATTACCTTATAGTGGACTCAAAGACAACTGTTAAACAAATTGAAGATGCTTTCAAAGAGTTCACTACAAGGGAGGATATTGCAATAGTGATGATTAGTCAATATGTTGCTAACATGATCAGGTTTCTGGTCGATAGCTATAACAAGCCAATTCCGGCGATACTGGAGATTCCTTCCAAGGATCACCCATATGACCCTGCACATGATTCAATTCTTTCACGAGTAAAGAACTTGTTTTCTACTGAATCGGTTGCATCTGGGAGGCGTTAA | 393 | 40.46 | MAGKAQIPTKSSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSILSRVKNLFSTESVASGRR | 130 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 30038567 | 30044266 | + | Tan0015090.1 | Tan11g1935 | 768872 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan11g1935 | 130 | PIRSF | V-ATP_synth_F | 3 | 123 | IPR005772 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Tan11g1935 | 130 | Pfam | ATP synthase (F/14-kDa) subunit | 15 | 116 | IPR008218 | GO:0034220(InterPro)|GO:0046961(InterPro) | |
| Tan11g1935 | 130 | Gene3D | ATPase, V1 complex, subunit F | 9 | 122 | IPR036906 | GO:0034220(InterPro) | |
| Tan11g1935 | 130 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT F | 1 | 126 | - | GO:0016020(PANTHER) | |
| Tan11g1935 | 130 | SUPERFAMILY | AtpF-like | 15 | 118 | IPR036906 | GO:0034220(InterPro) | |
| Tan11g1935 | 130 | FunFam | V-type proton ATPase subunit F | 9 | 122 | - | - | |
| Tan11g1935 | 130 | NCBIfam | V-type ATPase subunit F | 12 | 124 | IPR005772 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan11g1935 | K02151 | - | - | csv:101215239 | 249.595 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan11g1934 | Tan-Chr11:30038434 | Tan11g1935 | Tan-Chr11:30038567 | 3.40E-67 | tandem |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tan02g1718 | . | 1 | 996 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1636.3 | |
| Tan05g0297 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.0 | 0.0e+00 | 1339.7 | |
| Tan02g2027 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.7 | 5.6e-301 | 1030.8 | |
| Tan02g2028 | . | 1 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 63.6 | 1.4e-299 | 1026.2 | |
| Tan02g0771 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.1 | 1.3e-292 | 1003.0 | |
| Tan02g0771 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.9 | 0.0e+00 | 1231.1 | |
| Tan02g2027 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G21410 | 74.0 | 0.0e+00 | 1214.1 | |
| Tan02g2028 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1209.5 | |
| Tan05g0297 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 63.1 | 1.4e-299 | 1026.2 | |
| Tan02g0771 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1230.3 | |
| Tan02g2027 | . | 1 | 808 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1211.8 | |
| Tan02g2028 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.6 | 0.0e+00 | 1207.6 | |
| Tan05g0297 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 64.2 | 1.2e-298 | 1023.1 | |
| Tan02g2042 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan02g2043 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan01g4004 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan02g2042 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.2e-66 | 250.4 | |
| Tan02g2043 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.0e-66 | 249.6 | |
| Tan01g4004 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 4.5e-66 | 248.4 | |
| Tan02g2043 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan01g4004 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan02g2042 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.4e-73 | 272.3 | |
| Tan01g4004 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 7.7e-53 | 203.8 | |
| Tan02g2043 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.7e-52 | 202.6 | |
| Tan02g2042 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.5e-52 | 200.7 | |
| Tan01g3673 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.8e-71 | 266.5 | |
| Tan02g2689 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.9 | 1.2e-70 | 263.8 | |
| Tan01g3674 | . | 4 | 119 | Primary Pumps ATPases(2) | AT2G25610 | 86.2 | 2.0e-46 | 183.3 | |
| Tan02g2042 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan02g2043 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan01g4004 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan01g3673 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 1.2e-74 | 276.9 | |
| Tan02g2689 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 2.0e-72 | 269.6 | |
| Tan01g3674 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G32530 | 85.7 | 2.8e-50 | 196.1 | |
| Tan01g2494 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.5 | 0.0e+00 | 1690.6 | |
| Tan01g2494 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.2 | 0.0e+00 | 1688.7 | |
| Tan02g1718 | . | 1 | 996 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1636.3 | |
| Tan01g2494 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.2 | 0.0e+00 | 1329.3 | |
| Tan11g1934 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan11g1935 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan09g0175 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan02g0656 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 5.8e-269 | 923.7 | |
| Tan02g0657 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 5.8e-269 | 923.7 | |
| Tan11g1478 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 6.6e-180 | 627.5 | |
| Tan02g0107 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 9.5e-117 | 417.2 | |
| Tan02g0108 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 9.5e-117 | 417.2 | |
| Tan05g1770 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.0 | 2.8e-116 | 415.6 | |
| Tan05g1771 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.0 | 2.8e-116 | 415.6 | |
| Tan03g1281 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan03g1282 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan03g1283 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan02g2043 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan01g4004 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan02g2042 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.4e-73 | 272.3 | |
| Tan02g0656 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 2.6e-269 | 924.9 | |
| Tan02g0657 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 2.6e-269 | 924.9 | |
| Tan07g0064 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 1.6e-65 | 246.5 | |
| Tan02g0656 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 1.2e-266 | 916.0 | |
| Tan02g0657 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 1.2e-266 | 916.0 | |
| Tan05g0297 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.0 | 0.0e+00 | 1339.7 | |
| Tan02g2027 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.7 | 5.6e-301 | 1030.8 | |
| Tan02g2028 | . | 1 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 63.6 | 1.4e-299 | 1026.2 | |
| Tan02g0771 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.1 | 1.3e-292 | 1003.0 | |
| Tan07g1248 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.0e-192 | 666.8 | |
| Tan07g0064 | . | 1 | 231 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 6.2e-88 | 321.2 | |
| Tan06g0024 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.6 | 0.0e+00 | 1177.2 | |
| Tan02g0656 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 5.8e-269 | 923.7 | |
| Tan02g0657 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 5.8e-269 | 923.7 | |
| Tan02g0656 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 2.6e-269 | 924.9 | |
| Tan02g0657 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.3 | 2.6e-269 | 924.9 | |
| Tan02g0656 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 1.2e-266 | 916.0 | |
| Tan02g0657 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 1.2e-266 | 916.0 | |
| Tan11g1478 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 6.6e-180 | 627.5 | |
| Tan02g0107 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 9.5e-117 | 417.2 | |
| Tan02g0108 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 9.5e-117 | 417.2 | |
| Tan05g1770 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.0 | 2.8e-116 | 415.6 | |
| Tan05g1771 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.0 | 2.8e-116 | 415.6 | |
| Tan07g0064 | . | 1 | 231 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 6.2e-88 | 321.2 | |
| Tan07g0064 | . | 1 | 225 | Primary Pumps ATPases(2) | AT3G08560 | 69.9 | 6.0e-78 | 288.1 | |
| Tan07g0064 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 77.0 | 1.6e-65 | 246.5 | |
| Tan11g1934 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan11g1935 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan09g0175 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 83.3 | 9.2e-57 | 216.9 | |
| Tan03g1281 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan03g1282 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan03g1283 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.0 | 1.4e-205 | 713.0 | |
| Tan05g0297 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.0 | 0.0e+00 | 1339.7 | |
| Tan02g2027 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.7 | 5.6e-301 | 1030.8 | |
| Tan02g2028 | . | 1 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 63.6 | 1.4e-299 | 1026.2 | |
| Tan02g0771 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.1 | 1.3e-292 | 1003.0 | |
| Tan02g0771 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.9 | 0.0e+00 | 1231.1 | |
| Tan02g2027 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G21410 | 74.0 | 0.0e+00 | 1214.1 | |
| Tan02g2028 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.9 | 0.0e+00 | 1209.5 | |
| Tan05g0297 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 63.1 | 1.4e-299 | 1026.2 | |
| Tan02g0771 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1230.3 | |
| Tan02g2027 | . | 1 | 808 | Primary Pumps ATPases(2) | AT4G39080 | 74.7 | 0.0e+00 | 1211.8 | |
| Tan02g2028 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.6 | 0.0e+00 | 1207.6 | |
| Tan05g0297 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 64.2 | 1.2e-298 | 1023.1 | |
| Tan02g2042 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan02g2043 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan01g4004 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.0e-60 | 229.2 | |
| Tan01g4004 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 7.7e-53 | 203.8 | |
| Tan02g2043 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.7e-52 | 202.6 | |
| Tan02g2042 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.5e-52 | 200.7 | |
| Tan02g2042 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan02g2043 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan01g4004 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.6e-60 | 227.6 | |
| Tan02g2042 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.2e-66 | 250.4 | |
| Tan02g2043 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.0e-66 | 249.6 | |
| Tan01g4004 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 4.5e-66 | 248.4 | |
| Tan02g2043 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan01g4004 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.2e-74 | 274.2 | |
| Tan02g2042 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.4e-73 | 272.3 | |
| Tan01g3673 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 1.2e-74 | 276.9 | |
| Tan02g2689 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 2.0e-72 | 269.6 | |
| Tan01g3674 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G32530 | 85.7 | 2.8e-50 | 196.1 | |
| Tan01g3673 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.8e-71 | 266.5 | |
| Tan02g2689 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.9 | 1.2e-70 | 263.8 | |
| Tan01g3674 | . | 4 | 119 | Primary Pumps ATPases(2) | AT2G25610 | 86.2 | 2.0e-46 | 183.3 | |
| Tan07g1248 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 7.8e-199 | 690.3 | |
| Tan07g1248 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.0e-192 | 666.8 | |
| Tan01g2494 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.5 | 0.0e+00 | 1690.6 | |
| Tan01g2494 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.2 | 0.0e+00 | 1329.3 | |
| Tan02g1718 | . | 1 | 996 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1636.3 | |
| Tan01g2494 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.2 | 0.0e+00 | 1688.7 |