Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1944 ATGGTGGTGGAGACTAGAGTTTTGACATGGAGGAGGGGGTTCAACTCCCTTCAGGCTCTGGCTGCTCATGGCTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATGTCGTGTCTCACTCTTGGTGGATTGTTTTTTCACCTCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTTGAAGTACTTCTTTGTATATATTTAGAGTGCAGGAATGTTATAAATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGCTAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCTTACTGCCTGGAGATGAAGAAGACAATGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATTTCCATGGTTTTCTTCATCGCTGCAACCTTGTTCACTCTTCTTAAGCTTAGTGGCAATGTAGCTGCTTTAGGCTGGTGGGATTTATTTATAAATTTCTGTATAGCGGAGTGCTTTGCATTTCTTGTTTGCACGAAGTGGTATAATCCTTTGATTCATAGGCACTCTCTTGTTAGAGAATCAAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTGGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTTATCATTTTCCAAATACTGCTTTTTATGCGCTTAGAGGGAACCCCCAGGAGTGCTTCATGCATCCCTTGTCTTGTTCTGTTCTCTCCTCTTTTCTTACTGCAAGGAATGGGTTTTGTATTTGCGGCATATAGGTCAATGGAAAAAATTGTAATTTTACTAGTTGGTGCTCCTACTTCTGTAAGATATCTTGACCTAAGGTCAAAGGCTCGTGAACTTTTAGGGTTCATGCACCATGGATCGAGATTGCTAGGTTGGTGGTCAATCGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAACTTCTGGGTATGATACCTTCACACCAGAGACTGTAAAGAAAATGACCAAATCCAATCTCGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGGCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATCGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTCTGCAGCTCTTGCTGTGAGAAATGTAATCGGTGCCCGATCTGTCGGGAATCAATCGAAGAACGGGTGCCTGTAAATGATGTTTAG 1404 42.66 MVVETRVLTWRRGFNSLQALAAHGFLLSFTLTLALKLDHVVSHSWWIVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECRNVINLKIVFVPLMIFELAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGNVAALGWWDLFINFCIAECFAFLVCTKWYNPLIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKVPFIIFQILLFMRLEGTPRSASCIPCLVLFSPLFLLQGMGFVFAAYRSMEKIVILLVGAPTSVRYLDLRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGTSGYDTFTPETVKKMTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCCEKCNRCPICRESIEERVPVNDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30635983 30650752 - Tan0009196.1 Tan11g1944 768881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1944 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 464 IPR013083 -
Tan11g1944 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 9 467 - -
Tan11g1944 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Tan11g1944 467 SUPERFAMILY RING/U-box 410 461 - -
Tan11g1944 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Tan11g1944 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1939 Tan-Chr9:70362240 Tan11g1944 Tan-Chr11:30635983 1.40E-184 dispersed
Tan09g1940 Tan-Chr9:70362240 Tan11g1944 Tan-Chr11:30635983 4.00E-171 dispersed
Tan10g0887 Tan-Chr10:7456193 Tan11g1944 Tan-Chr11:30635983 9.20E-07 dispersed
Tan11g1944 Tan-Chr11:30635983 Tan11g1946 Tan-Chr11:30635983 2.10E-183 dispersed
Tan11g1944 Tan-Chr11:30635983 Tan11g1945 Tan-Chr11:30635983 1.50E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1944 - - - 0.0