Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1945 ATGATATTTGAGCTAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCTTACTGCCTGGAGATGAAGAAGACAATGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATTTCCATGGTTTTCTTCATCGCTGCAACCTTGTTCACTCTTCTTAAGCTTAGTGGCAATGTAGCTGCTTTAGGCTGGTGGGATTTATTTATAAATTTCTGTATAGCGGAGTGCTTTGCATTTCTTGTTTGCACGAAGTGGTATAATCCTTTGATTCATAGGCACTCTCTTGTTAGAGAATCAAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTGGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTTATCATTTTCCAAATACTGCTTTTTATGCGCTTAGAGGGAACCCCCAGGAGTGCTTCATGCATCCCTTGTCTTGTTCTGTTCTCTCCTCTTTTCTTACTGCAAGGAATGGGTTTTGTATTTGCGGCATATAGGTCAATGGAAAAAATTGTAATTTTACTAGTTGGTGCTCCTACTTCTGTAAGATATCTTGACCTAAGGTCAAAGGCTCGTGAACTTTTAGGGTTCATGCACCATGGATCGAGATTGCTAGGTTGGTGGTCAATCGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAACTTCTGGGTATGATACCTTCACACCAGAGACTGTAAAGAAAATGACCAAATCCAATCTCGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGGCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATCGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTCTGCAGCTCTTGCTGTGAGAAATGTAATCGGTGCCCGATCTGTCGGGAATCAATCGAAGAACGGGTGCCTGTAAATGATGTTTAG 1059 41.93 MIFELAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGNVAALGWWDLFINFCIAECFAFLVCTKWYNPLIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKVPFIIFQILLFMRLEGTPRSASCIPCLVLFSPLFLLQGMGFVFAAYRSMEKIVILLVGAPTSVRYLDLRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGTSGYDTFTPETVKKMTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCCEKCNRCPICRESIEERVPVNDV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30635983 30650752 - Tan0009196.2 Tan11g1945 768882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1945 352 ProSiteProfiles Zinc finger RING-type profile. 305 340 IPR001841 -
Tan11g1945 352 Pfam Zinc finger, C3HC4 type (RING finger) 303 345 - -
Tan11g1945 352 Pfam Transmembrane Fragile-X-F protein 2 180 IPR019396 -
Tan11g1945 352 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 352 - -
Tan11g1945 352 SUPERFAMILY RING/U-box 295 346 - -
Tan11g1945 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 349 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0888 Tan-Chr10:7456193 Tan11g1945 Tan-Chr11:30635983 9.20E-07 dispersed
Tan11g1944 Tan-Chr11:30635983 Tan11g1945 Tan-Chr11:30635983 1.50E-205 tandem
Tan11g1945 Tan-Chr11:30635983 Tan11g1946 Tan-Chr11:30635983 1.60E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1945 - - - 0.0