Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1946 ATGGGAAACGCTTCCTTGATTGATCTCTGGTTCCAGCACTTCTGGGTCTCAATTTCCATGGTTTTCTTCATCGCTGCAACCTTGTTCACTCTTCTTAAGCTTAGTGGCAATGTAGCTGCTTTAGGCTGGTGGGATTTATTTATAAATTTCTGTATAGCGGAGTGCTTTGCATTTCTTGTTTGCACGAAGTGGTATAATCCTTTGATTCATAGGCACTCTCTTGTTAGAGAATCAAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTGGTTTCCTCTGATGAGGTTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTTATCATTTTCCAAATACTGCTTTTTATGCGCTTAGAGGGAACCCCCAGGAGTGCTTCATGCATCCCTTGTCTTGTTCTGTTCTCTCCTCTTTTCTTACTGCAAGGAATGGGTTTTGTATTTGCGGCATATAGGTCAATGGAAAAAATTGTAATTTTACTAGTTGGTGCTCCTACTTCTGTAAGATATCTTGACCTAAGGTCAAAGGCTCGTGAACTTTTAGGGTTCATGCACCATGGATCGAGATTGCTAGGTTGGTGGTCAATCGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAACTTCTGGGTATGATACCTTCACACCAGAGACTGTAAAGAAAATGACCAAATCCAATCTCGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGGCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATCGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTCTGCAGCTCTTGCTGTGAGAAATGTAATCGGTGCCCGATCTGTCGGGAATCAATCGAAGAACGGGTGCCTGTAAATGATGTTTAG 984 42.28 MGNASLIDLWFQHFWVSISMVFFIAATLFTLLKLSGNVAALGWWDLFINFCIAECFAFLVCTKWYNPLIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQEIGGHIMKVPFIIFQILLFMRLEGTPRSASCIPCLVLFSPLFLLQGMGFVFAAYRSMEKIVILLVGAPTSVRYLDLRSKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGTSGYDTFTPETVKKMTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCCEKCNRCPICRESIEERVPVNDV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30635983 30650752 - Tan0009196.3 Tan11g1946 768883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1946 327 Pfam Zinc finger, C3HC4 type (RING finger) 278 320 - -
Tan11g1946 327 Pfam Transmembrane Fragile-X-F protein 12 155 IPR019396 -
Tan11g1946 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 324 IPR013083 -
Tan11g1946 327 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 11 327 - -
Tan11g1946 327 ProSiteProfiles Zinc finger RING-type profile. 280 315 IPR001841 -
Tan11g1946 327 SUPERFAMILY RING/U-box 270 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g1944 Tan-Chr11:30635983 Tan11g1946 Tan-Chr11:30635983 2.10E-183 dispersed
Tan11g1945 Tan-Chr11:30635983 Tan11g1946 Tan-Chr11:30635983 1.60E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1946 - - - 0.0