Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1947 ATGAAGGAGGAAGGAGAGTGCTTTCAAGGGTTTCCAGAGCAGCTTTTAATGCAACAATTCCAAACGATGCAGCAAAACGGCGACGTTTTTGGAGTAGGAGGAGGAGGCTTGATTTTCCCTGATGTGATGTTTCCGCCGGCGACGGCGATGGCAGCTATCCCTCAAGTCCACGGATTCAACCCGACCCGAGACCAACACGACCCGTTTATCCCCCCGCCGCCATCTTCCTACGCCAGCTTCTTCAATAGGAGAAACGCTTCTTTGCAGTTCCCTTACGATATTCATGCCAACAATAATCTTGGAATTGGGCAGATGGGTCAGCCCGGCTGTGGCCCGTTTGGCCTGCAGGCCGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCAAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATTAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAGCACCACGAAAACGGACAAGGCATCATTACTTGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACATTGATAGCCGATGTAAGTCCGGTGCCGACCGAGCTCGACGAGCTATCAGTCGACGTCGACGCATCGGACGAGGACGGGAAGTTTGTGATAAAAGCCTCCCTTTGTTGCGAGGACAGGTCTGATCTTTTGCCACAGATAATCAAAACCCTGAAATCCCTCCGCCTGAGAACCCTAAAAGCCGAGATCACAACGCTTGGCGGCCGCGTAAAGAACGTCTTGTTCATCACCGGTGACGACGACTCCTCGGACGACCAAGAAGAGCCTCAACACCACCACCAATACAGCATCAGTTCAATTCAGGAAGCCCTAAAGGCCGTGATGGAAAAAGTTTGTAGCGAAGACCAGTCCTCTTCAGGCAGCATTAAAAGACAAAGGACCAACAATCACAACAACATTAATATCATCGAACAACACAGGTCTCTCTAG 990 49.8 MKEEGECFQGFPEQLLMQQFQTMQQNGDVFGVGGGGLIFPDVMFPPATAMAAIPQVHGFNPTRDQHDPFIPPPPSSYASFFNRRNASLQFPYDIHANNNLGIGQMGQPGCGPFGLQAELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTTLIADVSPVPTELDELSVDVDASDEDGKFVIKASLCCEDRSDLLPQIIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDDDSSDDQEEPQHHHQYSISSIQEALKAVMEKVCSEDQSSSGSIKRQRTNNHNNINIIEQHRSL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31004043 31006445 - Tan0006284.1 Tan11g1947 768884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1947 329 MobiDBLite consensus disorder prediction 302 329 - -
Tan11g1947 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983(InterPro)
Tan11g1947 329 PANTHER TRANSCRIPTION FACTOR BHLH30 103 316 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan11g1947 329 Gene3D - 128 191 IPR036638 GO:0046983(InterPro)
Tan11g1947 329 FunFam transcription factor bHLH30 129 192 - -
Tan11g1947 329 CDD bHLH_AtAIG1_like 129 208 - -
Tan11g1947 329 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983(InterPro)
Tan11g1947 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 188 IPR036638 GO:0046983(InterPro)
Tan11g1947 329 SMART finulus 140 189 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2483 Tan-Chr2:93417581 Tan11g1947 Tan-Chr11:31004043 2.90E-27 dispersed
Tan03g1804 Tan-Chr3:73676387 Tan11g1947 Tan-Chr11:31004043 1.10E-15 dispersed
Tan10g0111 Tan-Chr10:1311704 Tan11g1947 Tan-Chr11:31004043 5.90E-08 dispersed
Tan11g1947 Tan-Chr11:31004043 Tan05g2403 Tan-Chr5:75250303 4.80E-09 dispersed
Tan05g2484 Tan-Chr5:76103459 Tan11g1947 Tan-Chr11:31004043 1.00E-30 transposed
Tan10g1588 Tan-Chr10:26787737 Tan11g1947 Tan-Chr11:31004043 8.50E-40 transposed
Tan11g0290 Tan-Chr11:2276972 Tan11g1947 Tan-Chr11:31004043 3.70E-28 transposed
Tan11g1947 Tan-Chr11:31004043 Tan04g0901 Tan-Chr4:7777428 1.40E-80 wgd
Tan11g1947 Tan-Chr11:31004043 Tan06g1902 Tan-Chr6:54341331 4.80E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28791 PF00010 HLH 1.60E-12 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1947 - - - 0.0