Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1966 ATGTGTGATTCGAAGGAGAAACGGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGCGAAGGCATCCAAGTTATTTCAAAAGATGAGTTCCATGATTCTCTCCTTTTGCCAGCTGAGGCAGCTCCAAACTTTTGTGAAAATAAGATTGATTCACCTGATACTCATGCACAGGAAGTTGCACCTCCTGAGGTTGATTTAGATAAACTTACGATTCCTCAGCAATCAAATCAATATTCTGCGCATTCACTTCCCTTAGATCACGACCAAGAGTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTAATAAGTTGTCCCCAAGGGAGTTGGGTTTAGATGCTGCCACTTCCAACACTCACTTGGAAACCGTACAATCCTCCATGGATGTCAAATCTGAGGCCTTTGGGATGCCTGAAACTAAAATTGGTTCTCTTGATGATGCTTCAATAGCAAGTCATGATGAACCTTTAACTCCCCATCCAATGTCATCTTGTATTAAAGCCGAAACAGAAAATACCATAGAATTGAAGGTCAATGAAGACAGTGTTTCTACACCTCATAACGGGCATTCAAACATGAATCACTCGTTTAGTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGGCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTAGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTACTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCCGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAAAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTACGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCTGATCCGGCAGGGCGCTTGGTTATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGAGTCACGCCCTTCAAAAAGGTGGTGAGTCTACCATCAAGGATCGATCCACATCAGACTTCTGCGGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1539 43.86 MCDSKEKRESAQDVPVALSEGIQVISKDEFHDSLLLPAEAAPNFCENKIDSPDTHAQEVAPPEVDLDKLTIPQQSNQYSAHSLPLDHDQELDKPDAEPASDVKTGPNKLSPRELGLDAATSNTHLETVQSSMDVKSEAFGMPETKIGSLDDASIASHDEPLTPHPMSSCIKAETENTIELKVNEDSVSTPHNGHSNMNHSFSLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELTVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGILKRKKPSYMEHAMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33339943 33347637 - Tan0015504.1 Tan11g1966 768903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1966 512 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 SUPERFAMILY HSP20-like chaperones 423 508 IPR008978 -
Tan11g1966 512 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 512 IPR002068 -
Tan11g1966 512 SMART ARID_2 214 304 - -
Tan11g1966 512 Pfam Hsp20/alpha crystallin family 429 509 IPR002068 -
Tan11g1966 512 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Tan11g1966 512 SUPERFAMILY ARID-like 212 319 IPR036431 GO:0003677(InterPro)
Tan11g1966 512 CDD ARID 222 304 - -
Tan11g1966 512 Gene3D - 402 512 IPR008978 -
Tan11g1966 512 CDD ACD_sHsps-like 427 507 - -
Tan11g1966 512 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 MobiDBLite consensus disorder prediction 86 113 - -
Tan11g1966 512 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 79 510 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan11g1966 512 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 MobiDBLite consensus disorder prediction 44 63 - -
Tan11g1966 512 FunFam AT-rich interactive domain-containing protein 3 404 512 - -
Tan11g1966 512 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5166 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.50E-117 dispersed
Tan01g5167 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.30E-85 dispersed
Tan08g2268 Tan-Chr8:74157396 Tan11g1966 Tan-Chr11:33339943 1.80E-281 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28793 PF00011 HSP20 8.40E-06 CL0190 Tan TR