Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g1966 ATGTGTGATTCGAAGGAGAAACGGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGCGAAGGCATCCAAGTTATTTCAAAAGATGAGTTCCATGATTCTCTCCTTTTGCCAGCTGAGGCAGCTCCAAACTTTTGTGAAAATAAGATTGATTCACCTGATACTCATGCACAGGAAGTTGCACCTCCTGAGGTTGATTTAGATAAACTTACGATTCCTCAGCAATCAAATCAATATTCTGCGCATTCACTTCCCTTAGATCACGACCAAGAGTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTAATAAGTTGTCCCCAAGGGAGTTGGGTTTAGATGCTGCCACTTCCAACACTCACTTGGAAACCGTACAATCCTCCATGGATGTCAAATCTGAGGCCTTTGGGATGCCTGAAACTAAAATTGGTTCTCTTGATGATGCTTCAATAGCAAGTCATGATGAACCTTTAACTCCCCATCCAATGTCATCTTGTATTAAAGCCGAAACAGAAAATACCATAGAATTGAAGGTCAATGAAGACAGTGTTTCTACACCTCATAACGGGCATTCAAACATGAATCACTCGTTTAGTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGGCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTAGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTACTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCCGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAAAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTACGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCTGATCCGGCAGGGCGCTTGGTTATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGAGTCACGCCCTTCAAAAAGGTGGTGAGTCTACCATCAAGGATCGATCCACATCAGACTTCTGCGGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1539 43.86 MCDSKEKRESAQDVPVALSEGIQVISKDEFHDSLLLPAEAAPNFCENKIDSPDTHAQEVAPPEVDLDKLTIPQQSNQYSAHSLPLDHDQELDKPDAEPASDVKTGPNKLSPRELGLDAATSNTHLETVQSSMDVKSEAFGMPETKIGSLDDASIASHDEPLTPHPMSSCIKAETENTIELKVNEDSVSTPHNGHSNMNHSFSLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELTVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGILKRKKPSYMEHAMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33339943 33347637 - Tan0015504.1 Tan11g1966 768903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g1966 512 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 SUPERFAMILY HSP20-like chaperones 423 508 IPR008978 -
Tan11g1966 512 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 512 IPR002068 -
Tan11g1966 512 SMART ARID_2 214 304 - -
Tan11g1966 512 Pfam Hsp20/alpha crystallin family 429 509 IPR002068 -
Tan11g1966 512 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Tan11g1966 512 SUPERFAMILY ARID-like 212 319 IPR036431 GO:0003677(InterPro)
Tan11g1966 512 CDD ARID 222 304 - -
Tan11g1966 512 Gene3D - 402 512 IPR008978 -
Tan11g1966 512 CDD ACD_sHsps-like 427 507 - -
Tan11g1966 512 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 MobiDBLite consensus disorder prediction 86 113 - -
Tan11g1966 512 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 79 510 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan11g1966 512 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Tan11g1966 512 MobiDBLite consensus disorder prediction 44 63 - -
Tan11g1966 512 FunFam AT-rich interactive domain-containing protein 3 404 512 - -
Tan11g1966 512 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5166 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.50E-117 dispersed
Tan01g5167 Tan-Chr1:116741878 Tan11g1966 Tan-Chr11:33339943 2.30E-85 dispersed
Tan08g2268 Tan-Chr8:74157396 Tan11g1966 Tan-Chr11:33339943 1.80E-281 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28793 PF00011 HSP20 8.40E-06 CL0190 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g1966 - - - 0.0