Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g1966 | ATGTGTGATTCGAAGGAGAAACGGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGCGAAGGCATCCAAGTTATTTCAAAAGATGAGTTCCATGATTCTCTCCTTTTGCCAGCTGAGGCAGCTCCAAACTTTTGTGAAAATAAGATTGATTCACCTGATACTCATGCACAGGAAGTTGCACCTCCTGAGGTTGATTTAGATAAACTTACGATTCCTCAGCAATCAAATCAATATTCTGCGCATTCACTTCCCTTAGATCACGACCAAGAGTTGGATAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTAATAAGTTGTCCCCAAGGGAGTTGGGTTTAGATGCTGCCACTTCCAACACTCACTTGGAAACCGTACAATCCTCCATGGATGTCAAATCTGAGGCCTTTGGGATGCCTGAAACTAAAATTGGTTCTCTTGATGATGCTTCAATAGCAAGTCATGATGAACCTTTAACTCCCCATCCAATGTCATCTTGTATTAAAGCCGAAACAGAAAATACCATAGAATTGAAGGTCAATGAAGACAGTGTTTCTACACCTCATAACGGGCATTCAAACATGAATCACTCGTTTAGTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGGCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTAGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCGAACTTACTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCCGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAAAAAAGGGAAAAACAACTTAAAGGCATTGGTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTACGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGCGTTCAGTCTGATCCGGCAGGGCGCTTGGTTATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGAGTCACGCCCTTCAAAAAGGTGGTGAGTCTACCATCAAGGATCGATCCACATCAGACTTCTGCGGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA | 1539 | 43.86 | MCDSKEKRESAQDVPVALSEGIQVISKDEFHDSLLLPAEAAPNFCENKIDSPDTHAQEVAPPEVDLDKLTIPQQSNQYSAHSLPLDHDQELDKPDAEPASDVKTGPNKLSPRELGLDAATSNTHLETVQSSMDVKSEAFGMPETKIGSLDDASIASHDEPLTPHPMSSCIKAETENTIELKVNEDSVSTPHNGHSNMNHSFSLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELTVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGILKRKKPSYMEHAMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33339943 | 33347637 | - | Tan0015504.1 | Tan11g1966 | 768903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g1966 | 512 | Pfam | ARID/BRIGHT DNA binding domain | 220 | 304 | IPR001606 | GO:0003677(InterPro) | |
Tan11g1966 | 512 | SUPERFAMILY | HSP20-like chaperones | 423 | 508 | IPR008978 | - | |
Tan11g1966 | 512 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 412 | 512 | IPR002068 | - | |
Tan11g1966 | 512 | SMART | ARID_2 | 214 | 304 | - | - | |
Tan11g1966 | 512 | Pfam | Hsp20/alpha crystallin family | 429 | 509 | IPR002068 | - | |
Tan11g1966 | 512 | FunFam | AT-rich interactive domain-containing protein 3 | 217 | 316 | - | - | |
Tan11g1966 | 512 | SUPERFAMILY | ARID-like | 212 | 319 | IPR036431 | GO:0003677(InterPro) | |
Tan11g1966 | 512 | CDD | ARID | 222 | 304 | - | - | |
Tan11g1966 | 512 | Gene3D | - | 402 | 512 | IPR008978 | - | |
Tan11g1966 | 512 | CDD | ACD_sHsps-like | 427 | 507 | - | - | |
Tan11g1966 | 512 | SMART | bright_3 | 218 | 309 | IPR001606 | GO:0003677(InterPro) | |
Tan11g1966 | 512 | MobiDBLite | consensus disorder prediction | 86 | 113 | - | - | |
Tan11g1966 | 512 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 79 | 510 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER) | |
Tan11g1966 | 512 | ProSiteProfiles | ARID domain profile. | 217 | 308 | IPR001606 | GO:0003677(InterPro) | |
Tan11g1966 | 512 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - | |
Tan11g1966 | 512 | FunFam | AT-rich interactive domain-containing protein 3 | 404 | 512 | - | - | |
Tan11g1966 | 512 | Gene3D | - | 217 | 314 | IPR036431 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g5166 | Tan-Chr1:116741878 | Tan11g1966 | Tan-Chr11:33339943 | 2.50E-117 | dispersed | |
Tan01g5167 | Tan-Chr1:116741878 | Tan11g1966 | Tan-Chr11:33339943 | 2.30E-85 | dispersed | |
Tan08g2268 | Tan-Chr8:74157396 | Tan11g1966 | Tan-Chr11:33339943 | 1.80E-281 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28793 | PF00011 | HSP20 | 8.40E-06 | CL0190 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g1966 | - | - | - | 0.0 |