Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2091 ATGCCATCGGCTCAAGATCCATTCTATGTTGTAAAGGACGAGATTCAAGAATCTATCGATAAGCTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCCGATCCGGGAGGGAGAGTACAACTCACAAAAGAGTTGCTCACTGCCTGTGAGAGCATTGAATGGCAGGTGGACGAATTGGACAAAGCCATTGCTGTGGCAACTAGAGATCCTTCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACAAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAGAGTAGTGGGAGCCGGAAAGGAGCAAACAGTAACTGCTACTGCAAATAGCATGCGCCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACATATATTCAGTCCACCAAGCAAATGATGACTTCATCACGTCCGAATCAGATAGACAGCTGCTTCTCATAAAGCAGCAGGACGAGGAGTTGGATGAGCTAAGCGCAAGCGTGGAGAGAATTGGAGGCGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGTGTACATTTTGTAG 579 45.6 MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGGRVQLTKELLTACESIEWQVDELDKAIAVATRDPSWYGIDDAELEKRRRWTSTARTQVGNVKRVVGAGKEQTVTATANSMRRELMRLPNAHETDRSNIYSVHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQVYIL 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 46791570 46813941 - Tan0015455.2 Tan11g2091 769028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2091 192 Gene3D - 156 192 - -
Tan11g2091 192 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan11g2091 192 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Tan11g2091 192 Gene3D - 2 104 - -
Tan11g2091 192 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Tan11g2091 192 FunFam Syntaxin 10 3 105 - -
Tan11g2091 192 CDD SNARE_Qc 157 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g2091 Tan-Chr11:46791570 Tan11g2093 Tan-Chr11:46791570 1.30E-102 dispersed
Tan11g2090 Tan-Chr11:46791570 Tan11g2091 Tan-Chr11:46791570 9.50E-103 tandem
Tan11g2091 Tan-Chr11:46791570 Tan11g2092 Tan-Chr11:46791570 1.80E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2091 K08500 - csv:101212527 345.125