Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2093 ATGCCATCGGCTCAAGATCCATTCTATGTTGTAAAGGACGAGATTCAAGAATCTATCGATAAGCTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCCGATCCGGGAGGGAGAGTACAACTCACAAAAGAGTTGCTCACTGCCTGTGAGAGCATTGAATGGCAGGTGGACGAATTGGACAAAGCCATTGCTGTGGCAACTAGAGATCCTTCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACAAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAGAGTAGTGGGAGCCGGAAAGGAGCAAACAGTAACTGCTACTGCAAATAGCATGCGCCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACATATATTCAGTCCACCAAGCAAATGATGACTTCATCACGTCCGAATCAGATAGACAGCTGCTTCTCATAAAGCAGCAGGACGAGGAGTTGGATGAGCTAAGCGCAAGCGTGGAGAGAATTGGAGGCGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATCGACGATCTTGGAATGGAAATGGACAGTACATCAAATCGTCTGGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAAAAAGCCAGCGCCAAGGGCCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTCGTGTTGGTGTTCCTCACCTAA 741 44.53 MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGGRVQLTKELLTACESIEWQVDELDKAIAVATRDPSWYGIDDAELEKRRRWTSTARTQVGNVKRVVGAGKEQTVTATANSMRRELMRLPNAHETDRSNIYSVHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 46791570 46797221 - Tan0015455.4 Tan11g2093 769030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2093 246 SMART tSNARE_6 149 216 IPR000727 -
Tan11g2093 246 Gene3D - 161 225 - -
Tan11g2093 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Tan11g2093 246 CDD SNARE_Qc 157 214 - -
Tan11g2093 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan11g2093 246 FunFam syntaxin-61 isoform X1 157 218 - -
Tan11g2093 246 Gene3D - 2 104 - -
Tan11g2093 246 SUPERFAMILY SNARE fusion complex 153 216 - -
Tan11g2093 246 PANTHER SYNTAXIN 11 235 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan11g2093 246 FunFam Syntaxin 10 3 105 - -
Tan11g2093 246 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Tan11g2093 246 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan11g2093 246 Pfam SNARE domain 191 242 IPR000727 -
Tan11g2093 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g2090 Tan-Chr11:46791570 Tan11g2093 Tan-Chr11:46791570 8.30E-131 dispersed
Tan11g2091 Tan-Chr11:46791570 Tan11g2093 Tan-Chr11:46791570 1.30E-102 dispersed
Tan11g2092 Tan-Chr11:46791570 Tan11g2093 Tan-Chr11:46791570 1.30E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2093 K08500 - csv:101212527 408.683