Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2174 ATGGCTGGCATGAGGCTCTTCATTCTGAAGTCGATTTATAGTTCCTCCAATTCTTATTTGAAGTCGTGCTCATTTCAATCTTACAAGTCTTGCACAAATGTGGCCCAGTACATTGACCGGGTTCTTAAATCGGGTGTCATTCTAAATAAAAAAGACTATAAAGATGAATCTCCCTGCTTGAAAAGCACTTCGTGTACTGCTTCCCAAAGAGCAGCCTCTGTATGTCGTTTACATAACTCCAGTTATGGTGCACATCGCATTGGTACCCTTTTGCCCGCATCATCAGTGAAATACTGGAACACCATCCCTCTTACTTCTCTTGGCCATCTGTCAAATCCTCGATTTTATTCATCGGCTTTTGATAGGAAAGATATAACTGGAGATAGTGGTGTTCCAGCAGCTTCTGTTGGCGTTGAAGCGGATATCAGTAACCCCCCCGATCTGGGAAGGGACTGGCTTGAAAGAGTTAAGGATGCCTGGCAGAGTGCTGTAGATGCAGCATCTTTTACCGGGCAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGCTCTTCGATTCACATCCATATCTGAAAAATGTAATTGTTCCTGTGAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGTCCTACTCTCTGGAAGCATATCTGTTGAGGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTGCGTTATCTTGTTACCTTCTTTGCATTCTCTCAAATTGGCACGATGGTTGCACCAACTGCGGTAGCATCAGAGTTTGTTTCACAGGCGTACAGAGGGGCTGTCATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACTAATGTGTTATCTCGAGCATTGGCCTCCCAGACTTTTGCAGGGCTTGATCGAGAAAGGTTACTTACCCTAGACAAAGTTTCATCCATTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACGGTTGGTGGCATTGGAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGCGCTGAAAAGTTTCCAATCATTGTTCCAAATTCTCTATTTTCTAGCCAGGTAATCATAAACAAGTCGCGGGCACAGTGGCGTGCAATCACCAAGAAAATTCCTTTGCAAGTTGATGATCTTAGTACGGTTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGGTCTCACCCTCAAGTGTTCTTGGGAAAGGAGGCTCCTTATTGTTTCCTCTCCCAAATTGAGAATACATATGCAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGTAAAGAAGAATTTTTCTCTACAGAGCAAGATATTCTCATTAAGTCAGTACATATCATTAAGGAAAATGGTGGAACCTTAGGCAACACCATGTTGGATTGGACGAACAAGTGA 1515 42.64 MAGMRLFILKSIYSSSNSYLKSCSFQSYKSCTNVAQYIDRVLKSGVILNKKDYKDESPCLKSTSCTASQRAASVCRLHNSSYGAHRIGTLLPASSVKYWNTIPLTSLGHLSNPRFYSSAFDRKDITGDSGVPAASVGVEADISNPPDLGRDWLERVKDAWQSAVDAASFTGQKAREVSDEFSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVVLLSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVSQAYRGAVILSLVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSIGLFAIGLMALAEASGVAVQSMLTVGGIGGQVVEMGLMTTSLLSAEKFPIIVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDLSTVSQISDNIKSMLRSHPQVFLGKEAPYCFLSQIENTYAELTIGCNLKKMGKEEFFSTEQDILIKSVHIIKENGGTLGNTMLDWTNK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 56894510 56918889 - Tan0021587.1 Tan11g2174 769111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2174 504 SUPERFAMILY Sm-like ribonucleoproteins 350 398 IPR010920 -
Tan11g2174 504 Gene3D - 351 397 IPR023408 -
Tan11g2174 504 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 163 363 - -
Tan11g2174 504 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 366 IPR011014 GO:0016020(InterPro)
Tan11g2174 504 Pfam Mechanosensitive ion channel, beta-domain 338 400 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2174 K22047 - csv:101220483 739.184