Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2174 ATGGCTGGCATGAGGCTCTTCATTCTGAAGTCGATTTATAGTTCCTCCAATTCTTATTTGAAGTCGTGCTCATTTCAATCTTACAAGTCTTGCACAAATGTGGCCCAGTACATTGACCGGGTTCTTAAATCGGGTGTCATTCTAAATAAAAAAGACTATAAAGATGAATCTCCCTGCTTGAAAAGCACTTCGTGTACTGCTTCCCAAAGAGCAGCCTCTGTATGTCGTTTACATAACTCCAGTTATGGTGCACATCGCATTGGTACCCTTTTGCCCGCATCATCAGTGAAATACTGGAACACCATCCCTCTTACTTCTCTTGGCCATCTGTCAAATCCTCGATTTTATTCATCGGCTTTTGATAGGAAAGATATAACTGGAGATAGTGGTGTTCCAGCAGCTTCTGTTGGCGTTGAAGCGGATATCAGTAACCCCCCCGATCTGGGAAGGGACTGGCTTGAAAGAGTTAAGGATGCCTGGCAGAGTGCTGTAGATGCAGCATCTTTTACCGGGCAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGCTCTTCGATTCACATCCATATCTGAAAAATGTAATTGTTCCTGTGAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGTCCTACTCTCTGGAAGCATATCTGTTGAGGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTGCGTTATCTTGTTACCTTCTTTGCATTCTCTCAAATTGGCACGATGGTTGCACCAACTGCGGTAGCATCAGAGTTTGTTTCACAGGCGTACAGAGGGGCTGTCATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACTAATGTGTTATCTCGAGCATTGGCCTCCCAGACTTTTGCAGGGCTTGATCGAGAAAGGTTACTTACCCTAGACAAAGTTTCATCCATTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACGGTTGGTGGCATTGGAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGCGCTGAAAAGTTTCCAATCATTGTTCCAAATTCTCTATTTTCTAGCCAGGTAATCATAAACAAGTCGCGGGCACAGTGGCGTGCAATCACCAAGAAAATTCCTTTGCAAGTTGATGATCTTAGTACGGTTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGGTCTCACCCTCAAGTGTTCTTGGGAAAGGAGGCTCCTTATTGTTTCCTCTCCCAAATTGAGAATACATATGCAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGTAAAGAAGAATTTTTCTCTACAGAGCAAGATATTCTCATTAAGTCAGTACATATCATTAAGGAAAATGGTGGAACCTTAGGCAACACCATGTTGGATTGGACGAACAAGTGA 1515 42.64 MAGMRLFILKSIYSSSNSYLKSCSFQSYKSCTNVAQYIDRVLKSGVILNKKDYKDESPCLKSTSCTASQRAASVCRLHNSSYGAHRIGTLLPASSVKYWNTIPLTSLGHLSNPRFYSSAFDRKDITGDSGVPAASVGVEADISNPPDLGRDWLERVKDAWQSAVDAASFTGQKAREVSDEFSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVVLLSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVSQAYRGAVILSLVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSIGLFAIGLMALAEASGVAVQSMLTVGGIGGQVVEMGLMTTSLLSAEKFPIIVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDLSTVSQISDNIKSMLRSHPQVFLGKEAPYCFLSQIENTYAELTIGCNLKKMGKEEFFSTEQDILIKSVHIIKENGGTLGNTMLDWTNK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 56894510 56918889 - Tan0021587.1 Tan11g2174 769111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2174 504 SUPERFAMILY Sm-like ribonucleoproteins 350 398 IPR010920 -
Tan11g2174 504 Gene3D - 351 397 IPR023408 -
Tan11g2174 504 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 163 363 - -
Tan11g2174 504 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 366 IPR011014 GO:0016020(InterPro)
Tan11g2174 504 Pfam Mechanosensitive ion channel, beta-domain 338 400 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2174 K22047 - - csv:101220483 739.184
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g2174 . 1 503 Mechanosensitive Ion Channel Family AT4G00290 50.6 4.7e-133 472.2
Tan01g1484 . 58 725 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.8e-196 683.3
Tan02g2481 . 10 705 Mechanosensitive Ion Channel Family AT5G10490 55.8 4.9e-194 675.2
Tan02g2481 . 10 685 Mechanosensitive Ion Channel Family AT1G58200 57.8 7.5e-198 688.0
Tan01g1484 . 49 695 Mechanosensitive Ion Channel Family AT1G58200 53.0 5.7e-174 608.6
Tan05g1092 . 45 934 Mechanosensitive Ion Channel Family AT1G53470 56.7 3.3e-270 928.7
Tan02g0642 . 83 943 Mechanosensitive Ion Channel Family AT1G53470 50.8 4.2e-233 805.4
Tan05g1093 . 45 676 Mechanosensitive Ion Channel Family AT1G53470 51.9 8.0e-160 562.0
Tan05g1092 . 45 929 Mechanosensitive Ion Channel Family AT3G14810 53.8 2.8e-250 862.4
Tan05g1092 . 49 934 Mechanosensitive Ion Channel Family AT1G78610 59.9 2.4e-286 982.2
Tan02g0642 . 61 941 Mechanosensitive Ion Channel Family AT1G78610 56.8 6.8e-265 911.0
Tan05g1093 . 49 676 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.2e-173 607.8
Tan05g1092 . 224 930 Mechanosensitive Ion Channel Family AT2G17000 61.5 2.2e-239 826.2
Tan02g0642 . 271 944 Mechanosensitive Ion Channel Family AT2G17000 59.2 1.7e-220 763.5
Tan05g1093 . 224 676 Mechanosensitive Ion Channel Family AT2G17000 58.3 3.5e-136 483.4
Tan09g1102 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 3.3e-199 692.6
Tan01g3463 . 80 728 Mechanosensitive Ion Channel Family AT5G12080 55.8 3.5e-193 672.5
Tan09g1099 . 67 720 Mechanosensitive Ion Channel Family AT5G12080 51.1 3.1e-165 579.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33