Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan11g2197 | ATGTCCTTTTCAGCTGCCTCAAGTCTTCCCTCGGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCTGATACAGATGAAGTTTATGCTCAGATAACTCTGTTACCGGAAATCAATCAAGGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCGTTTTGCAAGACGCTTACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGACTTACATGGCAATCAGTGGCATTTTCGGCACATTTTCAGAGGCCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGTGTGTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGAGTTCTAGCTACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCACAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGTGAGGAAGTTCCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGCCCACGGCCAACTGTTTTGCCTTCACCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGTGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTACTTCAAATTCACTTGGTTTTAACGGGAATAGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAACAGGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCTAACAGAGAACCTGTTGAAAAGAAACAGAACACTAGGAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCAGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCTAACATTCACCGATCAGATATCCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCACTAGAGTCGCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGCATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAACCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTCAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTGAAGAGACTGTCACCCAAGATAAAACTCCCACTCGGTGGAGAGACGAAGCTCAACAAGCCAGATTCCGATATGGTTGCCATCCACACGGAGGATCAATCATCCATCATCGGATCAGATTGTTGA | 2037 | 45.61 | MSFSAASSLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPEINQGEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTATSNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGQLCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLNKPDSDMVAIHTEDQSSIIGSDC | 678 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 59274760 | 59285356 | - | Tan0021422.1 | Tan11g2197 | 769134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan11g2197 | 678 | CDD | B3_DNA | 126 | 228 | IPR003340 | GO:0003677(InterPro) | |
Tan11g2197 | 678 | FunFam | Auxin response factor | 548 | 642 | - | - | |
Tan11g2197 | 678 | Pfam | Auxin response factor | 254 | 336 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Tan11g2197 | 678 | Gene3D | - | 291 | 364 | - | - | |
Tan11g2197 | 678 | MobiDBLite | consensus disorder prediction | 362 | 394 | - | - | |
Tan11g2197 | 678 | Gene3D | - | 125 | 230 | IPR015300 | - | |
Tan11g2197 | 678 | SUPERFAMILY | DNA-binding pseudobarrel domain | 117 | 257 | IPR015300 | - | |
Tan11g2197 | 678 | ProSiteProfiles | PB1 domain profile. | 553 | 646 | IPR053793 | - | |
Tan11g2197 | 678 | Pfam | AUX/IAA family | 600 | 644 | IPR033389 | - | |
Tan11g2197 | 678 | Pfam | AUX/IAA family | 552 | 589 | IPR033389 | - | |
Tan11g2197 | 678 | ProSiteProfiles | B3 DNA-binding domain profile. | 128 | 230 | IPR003340 | GO:0003677(InterPro) | |
Tan11g2197 | 678 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 22 | 643 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Tan11g2197 | 678 | SUPERFAMILY | CAD & PB1 domains | 555 | 630 | - | - | |
Tan11g2197 | 678 | MobiDBLite | consensus disorder prediction | 362 | 378 | - | - | |
Tan11g2197 | 678 | FunFam | Auxin response factor | 126 | 230 | - | - | |
Tan11g2197 | 678 | Pfam | B3 DNA binding domain | 128 | 228 | IPR003340 | GO:0003677(InterPro) | |
Tan11g2197 | 678 | SMART | B3_2 | 128 | 230 | IPR003340 | GO:0003677(InterPro) | |
Tan11g2197 | 678 | FunFam | Auxin response factor | 291 | 363 | - | - | |
Tan11g2197 | 678 | Gene3D | - | 548 | 642 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1062 | Tan-Chr1:10454652 | Tan11g2197 | Tan-Chr11:59274760 | 2.40E-175 | dispersed | |
Tan05g0270 | Tan-Chr5:2048686 | Tan11g2197 | Tan-Chr11:59274760 | 5.10E-129 | dispersed | |
Tan07g1529 | Tan-Chr7:66539205 | Tan11g2197 | Tan-Chr11:59274760 | 1.30E-173 | dispersed | |
Tan08g0912 | Tan-Chr8:12853855 | Tan11g2197 | Tan-Chr11:59274760 | 2.50E-17 | dispersed | |
Tan11g0523 | Tan-Chr11:4476529 | Tan11g2197 | Tan-Chr11:59274760 | 6.20E-115 | dispersed | |
Tan11g0864 | Tan-Chr11:7043824 | Tan11g2197 | Tan-Chr11:59274760 | 2.80E-59 | dispersed | |
Tan11g1469 | Tan-Chr11:13381373 | Tan11g2197 | Tan-Chr11:59274760 | 1.80E-47 | dispersed | |
Tan11g1470 | Tan-Chr11:13400344 | Tan11g2197 | Tan-Chr11:59274760 | 5.80E-32 | dispersed | |
Tan11g2197 | Tan-Chr11:59274760 | Tan11g2199 | Tan-Chr11:59274760 | 0.00E+00 | dispersed | |
Tan11g2197 | Tan-Chr11:59274760 | Tan11g2198 | Tan-Chr11:59274760 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28811 | PF02309 | AUX_IAA | 6.40E-06 | CL0072 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan11g2197 | K14486 | - | csv:101204612 | 1293.49 |