Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2197 ATGTCCTTTTCAGCTGCCTCAAGTCTTCCCTCGGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCTGATACAGATGAAGTTTATGCTCAGATAACTCTGTTACCGGAAATCAATCAAGGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCGTTTTGCAAGACGCTTACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGACTTACATGGCAATCAGTGGCATTTTCGGCACATTTTCAGAGGCCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGTGTGTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGAGTTCTAGCTACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCACAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGTGAGGAAGTTCCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGCCCACGGCCAACTGTTTTGCCTTCACCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGTGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTACTTCAAATTCACTTGGTTTTAACGGGAATAGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAACAGGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCTAACAGAGAACCTGTTGAAAAGAAACAGAACACTAGGAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCAGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCTAACATTCACCGATCAGATATCCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCACTAGAGTCGCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGCATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAACCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTCAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTGAAGAGACTGTCACCCAAGATAAAACTCCCACTCGGTGGAGAGACGAAGCTCAACAAGCCAGATTCCGATATGGTTGCCATCCACACGGAGGATCAATCATCCATCATCGGATCAGATTGTTGA 2037 45.61 MSFSAASSLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPEINQGEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTATSNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGQLCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLNKPDSDMVAIHTEDQSSIIGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 59274760 59285356 - Tan0021422.1 Tan11g2197 769134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2197 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Tan11g2197 678 FunFam Auxin response factor 548 642 - -
Tan11g2197 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2197 678 Gene3D - 291 364 - -
Tan11g2197 678 MobiDBLite consensus disorder prediction 362 394 - -
Tan11g2197 678 Gene3D - 125 230 IPR015300 -
Tan11g2197 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Tan11g2197 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Tan11g2197 678 Pfam AUX/IAA family 600 644 IPR033389 -
Tan11g2197 678 Pfam AUX/IAA family 552 589 IPR033389 -
Tan11g2197 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Tan11g2197 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2197 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Tan11g2197 678 MobiDBLite consensus disorder prediction 362 378 - -
Tan11g2197 678 FunFam Auxin response factor 126 230 - -
Tan11g2197 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Tan11g2197 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Tan11g2197 678 FunFam Auxin response factor 291 363 - -
Tan11g2197 678 Gene3D - 548 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1062 Tan-Chr1:10454652 Tan11g2197 Tan-Chr11:59274760 2.40E-175 dispersed
Tan05g0270 Tan-Chr5:2048686 Tan11g2197 Tan-Chr11:59274760 5.10E-129 dispersed
Tan07g1529 Tan-Chr7:66539205 Tan11g2197 Tan-Chr11:59274760 1.30E-173 dispersed
Tan08g0912 Tan-Chr8:12853855 Tan11g2197 Tan-Chr11:59274760 2.50E-17 dispersed
Tan11g0523 Tan-Chr11:4476529 Tan11g2197 Tan-Chr11:59274760 6.20E-115 dispersed
Tan11g0864 Tan-Chr11:7043824 Tan11g2197 Tan-Chr11:59274760 2.80E-59 dispersed
Tan11g1469 Tan-Chr11:13381373 Tan11g2197 Tan-Chr11:59274760 1.80E-47 dispersed
Tan11g1470 Tan-Chr11:13400344 Tan11g2197 Tan-Chr11:59274760 5.80E-32 dispersed
Tan11g2197 Tan-Chr11:59274760 Tan11g2199 Tan-Chr11:59274760 0.00E+00 dispersed
Tan11g2197 Tan-Chr11:59274760 Tan11g2198 Tan-Chr11:59274760 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28811 PF02309 AUX_IAA 6.40E-06 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2197 K14486 - csv:101204612 1293.49