Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2198 ATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCTGATACAGATGAAGTTTATGCTCAGATAACTCTGTTACCGGAAATCAATCAAGGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCGTTTTGCAAGACGCTTACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGACTTACATGGCAATCAGTGGCATTTTCGGCACATTTTCAGAGGCCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGTGTGTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGAGTTCTAGCTACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCACAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGTGAGGAAGTTCCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGCCCACGGCCAACTGTTTTGCCTTCACCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGTGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTACTTCAAATTCACTTGGTTTTAACGGGAATAGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAACAGGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCTAACAGAGAACCTGTTGAAAAGAAACAGAACACTAGGAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCAGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCTAACATTCACCGATCAGATATCCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCACTAGAGTCGCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGCATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAACCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTCAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTGAAGAGACTGTCACCCAAGATAAAACTCCCACTCGGTGGAGAGACGAAGCTCAACAAGCCAGATTCCGATATGGTTGCCATCCACACGGAGGATCAATCATCCATCATCGGATCAGATTGTTGA 1881 45.08 MEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPEINQGEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTATSNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGQLCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLNKPDSDMVAIHTEDQSSIIGSDC 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 59274760 59285356 - Tan0021422.2 Tan11g2198 769135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2198 626 FunFam Auxin response factor 74 178 - -
Tan11g2198 626 SUPERFAMILY DNA-binding pseudobarrel domain 65 205 IPR015300 -
Tan11g2198 626 CDD B3_DNA 74 176 IPR003340 GO:0003677(InterPro)
Tan11g2198 626 Pfam Auxin response factor 202 284 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2198 626 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677(InterPro)
Tan11g2198 626 FunFam Auxin response factor 496 590 - -
Tan11g2198 626 SMART B3_2 76 178 IPR003340 GO:0003677(InterPro)
Tan11g2198 626 Pfam AUX/IAA family 548 592 IPR033389 -
Tan11g2198 626 Pfam AUX/IAA family 500 537 IPR033389 -
Tan11g2198 626 Gene3D - 496 590 - -
Tan11g2198 626 FunFam Auxin response factor 239 311 - -
Tan11g2198 626 MobiDBLite consensus disorder prediction 310 342 - -
Tan11g2198 626 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 591 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2198 626 Gene3D - 73 178 IPR015300 -
Tan11g2198 626 Gene3D - 239 312 - -
Tan11g2198 626 SUPERFAMILY CAD & PB1 domains 503 578 - -
Tan11g2198 626 ProSiteProfiles PB1 domain profile. 501 594 IPR053793 -
Tan11g2198 626 MobiDBLite consensus disorder prediction 310 326 - -
Tan11g2198 626 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g2197 Tan-Chr11:59274760 Tan11g2198 Tan-Chr11:59274760 0.00E+00 tandem
Tan11g2198 Tan-Chr11:59274760 Tan11g2199 Tan-Chr11:59274760 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28812 PF02309 AUX_IAA 5.80E-06 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2198 K14486 - csv:101204612 1206.43