Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan11g2199 ATGTCCTTTTCAGCTGCCTCAAGTCTTCCCTCGGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGCTCTTCGGGCGGAACCTGATACAGATGAAGTTTATGCTCAGATAACTCTGTTACCGGAAATCAATCAAGGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCGTTTTGCAAGACGCTTACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGACTTACATGGCAATCAGTGGCATTTTCGGCACATTTTCAGAGGCCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGTGTGTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGAGTTCTAGCTACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCACAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGTGAGGAAGTTCCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGCCCACGGCCAACTGTTTTGCCTTCACCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGTGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTACTTCAAATTCACTTGGTTTTAACGGGAATAGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAACAGGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCTAACAGAGAACCTGTTGAAAAGAAACAGAACACTAGGAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCAGTTCCACCTGTAGACACGGAATTTGACCAGCATTCTGAACCGTCTAACATTCACCGATCAGATATCCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCACTAGAGTCGCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGCATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAACCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTCAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACAACAGAAGAAGTGAAGAGACTGTCACCCAAGATAAAACTCCCACTCGGTGGAGAGACGAAGCTCAACAAGCCAGATTCCGATATGGTTGCCATCCACACGGAGGATCAATCATCCATCATCGGATCAGATTGTTGA 2037 45.61 MSFSAASSLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVALRAEPDTDEVYAQITLLPEINQGEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTATSNSLGFNGNSSLGAVSSNTYWSNTNRVENVMDTSSHGANREPVEKKQNTRNGCRLFGIQLLGNSNVEEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGQLCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLNKPDSDMVAIHTEDQSSIIGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 59274760 59285356 - Tan0021422.3 Tan11g2199 769136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan11g2199 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Tan11g2199 678 FunFam Auxin response factor 548 642 - -
Tan11g2199 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2199 678 Gene3D - 291 364 - -
Tan11g2199 678 MobiDBLite consensus disorder prediction 362 394 - -
Tan11g2199 678 Gene3D - 125 230 IPR015300 -
Tan11g2199 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Tan11g2199 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Tan11g2199 678 Pfam AUX/IAA family 600 644 IPR033389 -
Tan11g2199 678 Pfam AUX/IAA family 552 589 IPR033389 -
Tan11g2199 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Tan11g2199 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan11g2199 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Tan11g2199 678 MobiDBLite consensus disorder prediction 362 378 - -
Tan11g2199 678 FunFam Auxin response factor 126 230 - -
Tan11g2199 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Tan11g2199 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Tan11g2199 678 FunFam Auxin response factor 291 363 - -
Tan11g2199 678 Gene3D - 548 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan11g2197 Tan-Chr11:59274760 Tan11g2199 Tan-Chr11:59274760 0.00E+00 dispersed
Tan11g2198 Tan-Chr11:59274760 Tan11g2199 Tan-Chr11:59274760 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28813 PF02309 AUX_IAA 6.40E-06 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan11g2199 K14486 - csv:101204612 1293.49